Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si027587m |
Family | PL4 |
Protein Properties | Length: 691 Molecular Weight: 75157 Isoelectric Point: 5.0966 |
Chromosome | Chromosome/Scaffold: 8 Start: 25013475 End: 25017319 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 40 | 634 | 0 |
AAAAGGVTLRVGSRQVVVDNGVVQVALSAPEGRITGVSYGGEPNLLDYDAGVGDYGGYWDSVWNYPGSGLPGLYNTLDGTEFNVVSSSEDQVELSFRSSS GFYCYAIFEHDGDYPALNITEARLVFKLNTGKFSYMAITDDIQRYMPSAVDRDEPRAVPLAYKEAVLLVDPKEPQFRGEVDDKYQYSLDNKDNIVHGWIS GGDPNPMGFWVITPSNEFKSGGPFKRELTSHVGPTSLTMFFGTHYVGKNMVFKIDDGESWKKVLGPVFIYLNSSPKSSNDLQSLWEDAKAQAQAEARNWP YSFLASPDFPKAHERGSITGRLLVRDRYLSKKDMPAAMAYIGLASPGQPGSWATESKGYQFWTSATSDGAFSIDNVRGGVYNLHAFVPGVLGNYCYNSPL TIAPGGSINVGDLVFKPPRSGPTLWEIGVPDRTAAEFYVPDPDPKYINKVFVSKDRYRQYGLWERYDALYPENDLVFTVGKSDESKDWFFAQVTRKVGQD TVPTTWQVRFNLDRVVEDGTYALRIALAAAETCRLQVQVNGGARGGGNVFTTPAMGDDNAIARHGIHGLQWSFKFEIAGHLLIQGDNTIDMKLTQ |
Full Sequence |
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Protein Sequence Length: 691 Download |
MTIAAAAAAA RAIRPSFLIV LLAIVAMAAA SLLAAASTEA AAAGGVTLRV GSRQVVVDNG 60 VVQVALSAPE GRITGVSYGG EPNLLDYDAG VGDYGGYWDS VWNYPGSGLP GLYNTLDGTE 120 FNVVSSSEDQ VELSFRSSSG FYCYAIFEHD GDYPALNITE ARLVFKLNTG KFSYMAITDD 180 IQRYMPSAVD RDEPRAVPLA YKEAVLLVDP KEPQFRGEVD DKYQYSLDNK DNIVHGWISG 240 GDPNPMGFWV ITPSNEFKSG GPFKRELTSH VGPTSLTMFF GTHYVGKNMV FKIDDGESWK 300 KVLGPVFIYL NSSPKSSNDL QSLWEDAKAQ AQAEARNWPY SFLASPDFPK AHERGSITGR 360 LLVRDRYLSK KDMPAAMAYI GLASPGQPGS WATESKGYQF WTSATSDGAF SIDNVRGGVY 420 NLHAFVPGVL GNYCYNSPLT IAPGGSINVG DLVFKPPRSG PTLWEIGVPD RTAAEFYVPD 480 PDPKYINKVF VSKDRYRQYG LWERYDALYP ENDLVFTVGK SDESKDWFFA QVTRKVGQDT 540 VPTTWQVRFN LDRVVEDGTY ALRIALAAAE TCRLQVQVNG GARGGGNVFT TPAMGDDNAI 600 ARHGIHGLQW SFKFEIAGHL LIQGDNTIDM KLTQTGAAAP AKIAGVMYDY IRLEGPSSGG 660 IPTLAPLDRV WMGILFLSLV AFLAMPCPVI * |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10316 | RGL4_M | 9.0e-28 | 353 | 452 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 3.0e-47 | 464 | 654 | 192 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 8.0e-52 | 123 | 319 | 210 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 1.0e-53 | 66 | 219 | 177 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 44 | 658 | 46 | 691 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF27519.2 | 0 | 3 | 658 | 1 | 634 | Os11g0134100 [Oryza sativa Japonica Group] |
DDBJ | BAF29096.2 | 0 | 44 | 657 | 46 | 690 | Os12g0131900 [Oryza sativa Japonica Group] |
RefSeq | NP_001066077.1 | 0 | 44 | 658 | 46 | 678 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002450784.1 | 0 | 45 | 685 | 39 | 694 | hypothetical protein SORBIDRAFT_05g018090 [Sorghum bicolor] |