Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si027699m |
Family | PL4 |
Protein Properties | Length: 707 Molecular Weight: 78335 Isoelectric Point: 8.8105 |
Chromosome | Chromosome/Scaffold: 8 Start: 234066 End: 238019 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 91 | 677 | 0 |
ARVLVDNGVVQVTLSKPQGHITAVGYNGERNLLHYAGQENSGGYRDVVWNYPGSDHPRGMIDMLDSTEFKVISSSQEQVELSFRSTYNPSCQDSVRLNID KRLVMLKGSSGFYCYAIFEHTSNWPAMNISEARLAFKLNTDKFNYMAISDDIQRYMPSAADRDEPRGTALAYKEAVLLVNPEEPQFKGEVDDKYQYSLDN KDNVVHGWISSNHPNPMGFWVITPSNEFKSGGPMKRELTSHVGPTSLTMFLGTHYIGDDIVLNIGGGEYWKKVLGPVFIYLNSSPKHGDLRALWQDAKAQ AQTEVSKWPYSFPKSPDFAKAGKRGSVTGRLMVRDRFMRKDDMPTRMAYIGLAAPGQPGSWATECKGYQFWTTATSCGSFTIGNVRAGVYNLYAWVPGVL GDYMYTCAVTVTPGCAIDLGDLVFLPPRSGPTLWEIGVPDGTAAEFFIPDVDPRYANRLFLHREKLYPDSDQSLTVGQSDHSKDWFFAHVTRKLGNGNVP ATRQIRFNLDHVVADGTYTLRIALAAAQMSRLQVHVNGGGLFTTPEFGGGNAIARHGIHGVQWSFEFPIRGYLLQEGENRLSITQSR |
Full Sequence |
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Protein Sequence Length: 707 Download |
MLRRRPAFIK SRTGKWAVQC NLISCCNCLI LLLSLVGSIV TGRPIGFRGR AQAGGGGCSS 60 LKQAASYETF PPNVVVKSCI VRSGRTNKCT ARVLVDNGVV QVTLSKPQGH ITAVGYNGER 120 NLLHYAGQEN SGGYRDVVWN YPGSDHPRGM IDMLDSTEFK VISSSQEQVE LSFRSTYNPS 180 CQDSVRLNID KRLVMLKGSS GFYCYAIFEH TSNWPAMNIS EARLAFKLNT DKFNYMAISD 240 DIQRYMPSAA DRDEPRGTAL AYKEAVLLVN PEEPQFKGEV DDKYQYSLDN KDNVVHGWIS 300 SNHPNPMGFW VITPSNEFKS GGPMKRELTS HVGPTSLTMF LGTHYIGDDI VLNIGGGEYW 360 KKVLGPVFIY LNSSPKHGDL RALWQDAKAQ AQTEVSKWPY SFPKSPDFAK AGKRGSVTGR 420 LMVRDRFMRK DDMPTRMAYI GLAAPGQPGS WATECKGYQF WTTATSCGSF TIGNVRAGVY 480 NLYAWVPGVL GDYMYTCAVT VTPGCAIDLG DLVFLPPRSG PTLWEIGVPD GTAAEFFIPD 540 VDPRYANRLF LHREKLYPDS DQSLTVGQSD HSKDWFFAHV TRKLGNGNVP ATRQIRFNLD 600 HVVADGTYTL RIALAAAQMS RLQVHVNGGG LFTTPEFGGG NAIARHGIHG VQWSFEFPIR 660 GYLLQEGENR LSITQSRAFG EFLGVMYDYI RLEGPPGSWR DPTRRP* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 5.0e-29 | 413 | 512 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-49 | 524 | 693 | 173 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 6.0e-67 | 91 | 380 | 293 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 5.0e-94 | 76 | 280 | 205 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA96404.1 | 0 | 92 | 702 | 56 | 696 | LG27/30-like gene, putative, expressed [Oryza sativa (japonica cultivar-group)] |
DDBJ | BAF29096.2 | 0 | 92 | 695 | 56 | 689 | Os12g0131900 [Oryza sativa Japonica Group] |
GenBank | EEC68814.1 | 0 | 92 | 702 | 56 | 653 | hypothetical protein OsI_37377 [Oryza sativa Indica Group] |
RefSeq | NP_001066077.1 | 0 | 92 | 702 | 56 | 683 | Os12g0131900 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002441731.1 | 0 | 103 | 702 | 85 | 719 | hypothetical protein SORBIDRAFT_08g001440 [Sorghum bicolor] |