Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si027980m |
Family | CE8 |
Protein Properties | Length: 472 Molecular Weight: 48898.2 Isoelectric Point: 8.396 |
Chromosome | Chromosome/Scaffold: 8 Start: 39054091 End: 39055545 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 82 | 380 | 0 |
YVVDPSGGGDYTNITAALADIPDGNTKRVILDLKPGVVFREKLFLNISKPFITFKSDPMKPATISWNDTAATLGKDGKPVGTVGSTTVAVESDYFMAYGV VFRNDAPLAKPGAKGGQAVALRLFGTKAALYNCTIDGGQDTLYDHKGLHYFKDCLIRGSVDFIFGFGRSFYEDCRIESVVKEVAVLTAQQRTKSIEGAID SGFSFKNCSIGGVKGGQIYLGRAWGDSSRVVYAYTEMGEEVVPIGWDGWNVAKPESSGIYYGEFKCFGAGADAKKKKRVGWALDLTEEQAKPFVGAHYI |
Full Sequence |
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Protein Sequence Length: 472 Download |
MARRSSSAAV VPMIVLAAAL ASSLLPAAAA GGGAGASFGN WIALNQQSYA VNAALYAQKS 60 AGEGGKTLDT NLSAAEEKKV VYVVDPSGGG DYTNITAALA DIPDGNTKRV ILDLKPGVVF 120 REKLFLNISK PFITFKSDPM KPATISWNDT AATLGKDGKP VGTVGSTTVA VESDYFMAYG 180 VVFRNDAPLA KPGAKGGQAV ALRLFGTKAA LYNCTIDGGQ DTLYDHKGLH YFKDCLIRGS 240 VDFIFGFGRS FYEDCRIESV VKEVAVLTAQ QRTKSIEGAI DSGFSFKNCS IGGVKGGQIY 300 LGRAWGDSSR VVYAYTEMGE EVVPIGWDGW NVAKPESSGI YYGEFKCFGA GADAKKKKRV 360 GWALDLTEEQ AKPFVGAHYI FGDSWIQPPS TEAAAAPQAA AKAPTTAEAP AAAEATTNVT 420 AAKAPAAEAK NATAAKTTPA AEAKNASATE SAKASPAAEA TKSSSSAATP K* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 4.0e-80 | 68 | 388 | 331 | + probable pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-83 | 81 | 388 | 308 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-87 | 81 | 387 | 310 | + pectinesterase | ||
PLN02682 | PLN02682 | 9.0e-104 | 80 | 388 | 309 | + pectinesterase family protein | ||
PLN02665 | PLN02665 | 1.0e-108 | 67 | 389 | 324 | + pectinesterase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF22736.1 | 0 | 11 | 391 | 3 | 381 | pectinesterase family protein [Brachypodium distachyon] |
GenBank | ACF82787.1 | 0 | 38 | 389 | 39 | 387 | unknown [Zea mays] |
RefSeq | NP_001068464.1 | 0 | 24 | 469 | 32 | 484 | Os11g0683700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001144148.1 | 0 | 38 | 389 | 39 | 387 | hypothetical protein LOC100277001 [Zea mays] |
RefSeq | XP_002451275.1 | 0 | 35 | 389 | 39 | 395 | hypothetical protein SORBIDRAFT_05g026816 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 3e-32 | 83 | 387 | 10 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 8e-28 | 83 | 387 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 2e-18 | 87 | 383 | 13 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 2e-18 | 87 | 383 | 13 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 2e-18 | 87 | 383 | 13 | 336 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |