Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si028069m |
Family | GH3 |
Protein Properties | Length: 644 Molecular Weight: 68136 Isoelectric Point: 7.6349 |
Chromosome | Chromosome/Scaffold: 8 Start: 35521022 End: 35523747 |
Description | beta-xylosidase 2 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 33 | 234 | 0 |
TVLAGHAVSDEARAMYNGGQAGLTFWSPNVNIFRDPRRGRGQETPSEDPAVSARYAAAYVRGLQQQQQQSPSASGDSRLKLAACCKHFTAYDLDRWGGTD RFHFNAVVAAQDLEDTFNVPFRACVADGEAASVMCSYNQVNGVPTCADEGFLGGTIRGKWGLDGYVVSDCDSVDVFFRDQHYTRTTEDAVAATLRAGLDL DC |
Full Sequence |
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Protein Sequence Length: 644 Download |
MLATTTSQRH KRPPHKHSAG TCTVHCTALA HATVLAGHAV SDEARAMYNG GQAGLTFWSP 60 NVNIFRDPRR GRGQETPSED PAVSARYAAA YVRGLQQQQQ QSPSASGDSR LKLAACCKHF 120 TAYDLDRWGG TDRFHFNAVV AAQDLEDTFN VPFRACVADG EAASVMCSYN QVNGVPTCAD 180 EGFLGGTIRG KWGLDGYVVS DCDSVDVFFR DQHYTRTTED AVAATLRAGL DLDCGPLLAQ 240 YTESAVAKGK VSDADMRLGM FDGDPAAGPF GHLGPKDVCT PAHQELTLEA ARQGVVLLKN 300 EKGKHRGGVL PLRPATHRTV AVVGPHAEAT VAMIGNYAGK PCRYNTPLQG VAGYVRQAVH 360 AAGCTDKVEA EGLDQSTLLL PGRQAELISA VAKASKGPVV LVLMSGGPID IAFAQNDPRI 420 AAILWVGYPG QAGGQAIADV IFGHHNPGGK LPVTWYPEDY LRKAPMTNMA MRANPASGYP 480 GRTYRFYTGP TILPFGHGLS YTRFTHSLAH APEKLTVQLT GGHASFPNAT RSAGAVRVAH 540 ARCEGLTVPV HVDVRNAGDR DGAHTVLVYH SPPSGVAGAP ARQLVAFEKV HVAAGGVAPV 600 EMGVDVCEGM SVADRDGVRR IPVGDHSLMI GELTLGVERL GWA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG1472 | BglX | 3.0e-25 | 26 | 352 | 335 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 6.0e-28 | 27 | 255 | 244 | + Glycosyl hydrolase family 3 N terminal domain. | ||
pfam01915 | Glyco_hydro_3_C | 1.0e-50 | 295 | 503 | 244 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
PRK15098 | PRK15098 | 2.0e-54 | 39 | 595 | 643 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 35 | 633 | 648 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABA95273.1 | 0 | 35 | 641 | 224 | 882 | Beta-D-xylosidase, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACG29242.1 | 0 | 47 | 641 | 1 | 654 | auxin-induced beta-glucosidase [Zea mays] |
GenBank | EAY81823.1 | 0 | 35 | 641 | 224 | 884 | hypothetical protein OsI_36995 [Oryza sativa Indica Group] |
RefSeq | NP_001145980.1 | 0 | 35 | 641 | 128 | 793 | hypothetical protein LOC100279508 [Zea mays] |
RefSeq | XP_002451244.1 | 0 | 35 | 641 | 135 | 789 | hypothetical protein SORBIDRAFT_05g026400 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 58 | 642 | 128 | 735 | A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution |
PDB | 3u48_A | 0 | 58 | 642 | 128 | 735 | A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution |
PDB | 3u4a_B | 1.4013e-45 | 58 | 642 | 128 | 735 | A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution |
PDB | 3u4a_A | 1.4013e-45 | 58 | 642 | 128 | 735 | A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution |
PDB | 2x41_A | 2e-31 | 59 | 596 | 117 | 665 | A Chain A, Crystal Structure Of Narbonin Refined At 1.8 Angstroms Resolution |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL808019 | 256 | 403 | 641 | 0 |
FL806122 | 260 | 378 | 624 | 0 |
EB642461 | 261 | 398 | 641 | 0 |
DY269886 | 327 | 255 | 551 | 0 |
DY291330 | 337 | 325 | 631 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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