| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si028218m |
| Family | GH28 |
| Protein Properties | Length: 341 Molecular Weight: 34701.4 Isoelectric Point: 9.0356 |
| Chromosome | Chromosome/Scaffold: 8 Start: 8297646 End: 8298984 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 92 | 326 | 0 |
| QTLDISQSNNVSVRRLTLLNSKNVHLAIFDCTGVTLRGVRIAAPADSPNTDGVHVQLSRGVRVLGATVGTGDDCVSLGPGTSNVLVRNIRCGPGHGISIG SLGGDAAGEAPVRNVTVEGAALTGTQNGMRIKTWGRPNRGLVAGVSFARVTMRGVRNPAVVDQNYCPSNVNCPGESSGVKISGVEYADIEGTSATPVAVR FDCSGSNPCTRITLKNINLTYEGKPAKSFCKYAHG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 341 Download |
| MGVLALVVMT AAAAEYNVVG YGARPGGRED SAPAFLAACN YTGRSAPVVR VPAGTFLVSR 60 AYFGGPCRSA AGVVVAVDGT VVAPAAVDST TQTLDISQSN NVSVRRLTLL NSKNVHLAIF 120 DCTGVTLRGV RIAAPADSPN TDGVHVQLSR GVRVLGATVG TGDDCVSLGP GTSNVLVRNI 180 RCGPGHGISI GSLGGDAAGE APVRNVTVEG AALTGTQNGM RIKTWGRPNR GLVAGVSFAR 240 VTMRGVRNPA VVDQNYCPSN VNCPGESSGV KISGVEYADI EGTSATPVAV RFDCSGSNPC 300 TRITLKNINL TYEGKPAKSF CKYAHGLAAG VVRPPSCLSS * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 3.0e-65 | 100 | 337 | 241 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 8.0e-72 | 101 | 340 | 242 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-73 | 94 | 325 | 233 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02155 | PLN02155 | 4.0e-79 | 92 | 339 | 249 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAX95166.1 | 0 | 47 | 338 | 61 | 393 | Polygalacturonase (pectinase) [Oryza sativa Japonica Group] |
| GenBank | EEC82569.1 | 0 | 13 | 338 | 25 | 394 | hypothetical protein OsI_27120 [Oryza sativa Indica Group] |
| RefSeq | XP_002309718.1 | 0 | 3 | 338 | 15 | 392 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529090.1 | 0 | 1 | 338 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| RefSeq | XP_002529091.1 | 0 | 1 | 338 | 9 | 392 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 8e-23 | 89 | 313 | 149 | 364 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1hg8_A | 0.000000000000003 | 106 | 323 | 116 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 0.00000000000003 | 140 | 311 | 152 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000003 | 140 | 311 | 152 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000003 | 140 | 311 | 152 | 319 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
