Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si028759m |
Family | CBM22 |
Protein Properties | Length: 1100 Molecular Weight: 123342 Isoelectric Point: 7.148 |
Chromosome | Chromosome/Scaffold: 2 Start: 14259888 End: 14266120 |
Description | glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM22 | 49 | 186 | 1.8e-29 |
NILSNNDFSEGLHLWQPNSCHAFVAVEGSGYHYGVRPHSGSSYAVLTHRTQSWQGLEQDITEKVTLGTAYFVAAYVRVCGEVHEPVPVQATLKFEDESSS TNYVSIARILASQERWEKMEGSFNLTTLPRRLVFYLEG | |||
CBM22 | 389 | 522 | 9.5e-30 |
IIKNPHFEDGLRSWSGRGCNICRHELTAYGNVRPLNGSYFASATGRVHNWNGIQQEITGRVQRKVLYEISSAVRIFGSANDTEVRATLWVQEYGRDRYVG LAKNQASDKQWTHLKGRFLLHAPFTKAVIFIEGP | |||
CBM22 | 218 | 356 | 3.1e-31 |
NVISNYDFSKGLHPWNPICCHAYVASQWSGFLDGIRGNSGENYAVVSKRTEHWQGLEQDITNRVSTGTAYVVSAVVRVDGNVQGQVEVKGTLRLQNTDGS THYNPVGSVLASKEKWNKLEGSFSLTSMPKHVVFYLEGP | |||
CBM22 | 557 | 697 | 4.2e-38 |
NLLHNSAFTRGLAGWSPMGSCRLSIQTEAPHMLSSILKDRASQKHISGRYILATNRTEVWMGPSQVITDKLRLHVTYRVSAWVRAGSGGHGRHHVNVCLA VDNQWVNGGQVEADGDQWYEIKGAFKLEKQPSKVTAYVQGP | |||
GH10 | 754 | 1035 | 0 |
QQTENSFPFGSCIARHNIENEDLAEFFVKNFNWAVFENELKWYHTEAEQGRLNYKDSDELLEFCEKHKIQVRGHCLFWEVEDAVQPWVRSLQGHHLMAAI QNRLQSLLSRYKGRFRHHDVNNEMLHGSFYEDRLGRDIRAYMFREAHKLDPSAVLFVNDYNVEDGCDTKSTPEKFVEQVVDLQERGAPVGGIGVQGHISH PVGEVICDNLDKLAILGLPIWITELDVTAENEHLRADDLEVFLREAFAHPAVGGIILWGFWEMFMFREHAHLVDADGTINEA |
Full Sequence |
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Protein Sequence Length: 1100 Download |
MRRRCAWLSS LCRPRRGGRA LPQPDQRRPD SEPEVVDKPG ASDEVVMENI LSNNDFSEGL 60 HLWQPNSCHA FVAVEGSGYH YGVRPHSGSS YAVLTHRTQS WQGLEQDITE KVTLGTAYFV 120 AAYVRVCGEV HEPVPVQATL KFEDESSSTN YVSIARILAS QERWEKMEGS FNLTTLPRRL 180 VFYLEGTPPG VDLLIDSITV SYKKTERSVS SSIGGTENVI SNYDFSKGLH PWNPICCHAY 240 VASQWSGFLD GIRGNSGENY AVVSKRTEHW QGLEQDITNR VSTGTAYVVS AVVRVDGNVQ 300 GQVEVKGTLR LQNTDGSTHY NPVGSVLASK EKWNKLEGSF SLTSMPKHVV FYLEGPPAGV 360 DLIIDSVTIT CSGHKQSKEV KVPSGVETII KNPHFEDGLR SWSGRGCNIC RHELTAYGNV 420 RPLNGSYFAS ATGRVHNWNG IQQEITGRVQ RKVLYEISSA VRIFGSANDT EVRATLWVQE 480 YGRDRYVGLA KNQASDKQWT HLKGRFLLHA PFTKAVIFIE GPPAGIDILV DGLVLSPARK 540 LEAAPCPKVE NVVYGANLLH NSAFTRGLAG WSPMGSCRLS IQTEAPHMLS SILKDRASQK 600 HISGRYILAT NRTEVWMGPS QVITDKLRLH VTYRVSAWVR AGSGGHGRHH VNVCLAVDNQ 660 WVNGGQVEAD GDQWYEIKGA FKLEKQPSKV TAYVQGPPPG VDLRVMDLQI YPVDRKARFE 720 YLKEKTDKVR KRDVVLKFQG SNAVNLLGSI VRIQQTENSF PFGSCIARHN IENEDLAEFF 780 VKNFNWAVFE NELKWYHTEA EQGRLNYKDS DELLEFCEKH KIQVRGHCLF WEVEDAVQPW 840 VRSLQGHHLM AAIQNRLQSL LSRYKGRFRH HDVNNEMLHG SFYEDRLGRD IRAYMFREAH 900 KLDPSAVLFV NDYNVEDGCD TKSTPEKFVE QVVDLQERGA PVGGIGVQGH ISHPVGEVIC 960 DNLDKLAILG LPIWITELDV TAENEHLRAD DLEVFLREAF AHPAVGGIIL WGFWEMFMFR 1020 EHAHLVDADG TINEAGRRYL ALKQEWLTRV NGNVSHQGEF KFRGYHGSYT VEVDTPSGKV 1080 ARSFVVDKDS PVQVVNLNI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02018 | CBM_4_9 | 2.0e-15 | 389 | 524 | 138 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
pfam02018 | CBM_4_9 | 1.0e-17 | 218 | 358 | 142 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
COG3693 | XynA | 2.0e-41 | 747 | 1013 | 291 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-72 | 757 | 1043 | 307 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 6.0e-77 | 793 | 1038 | 267 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
GO:0016798 | hydrolase activity, acting on glycosyl bonds |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAZ03745.1 | 0 | 36 | 1099 | 19 | 1082 | hypothetical protein OsI_25875 [Oryza sativa Indica Group] |
GenBank | EAZ39688.1 | 0 | 36 | 1099 | 19 | 1082 | hypothetical protein OsJ_24125 [Oryza sativa Japonica Group] |
RefSeq | NP_001059561.1 | 0 | 1 | 1099 | 1 | 1101 | Os07g0456700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002301133.1 | 0 | 48 | 1094 | 1 | 1045 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002459803.1 | 0 | 1 | 1099 | 1 | 1098 | hypothetical protein SORBIDRAFT_02g010990 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1xyz_B | 1e-29 | 748 | 1017 | 25 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1xyz_A | 1e-29 | 748 | 1017 | 25 | 311 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
PDB | 1nq6_A | 4e-29 | 762 | 1034 | 15 | 291 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1x_A | 4e-29 | 762 | 1033 | 18 | 289 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
PDB | 1i1w_A | 4e-29 | 762 | 1033 | 18 | 289 | A Chain A, 0.89a Ultra High Resolution Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GO850973 | 328 | 681 | 1008 | 0 |
GT037746 | 297 | 804 | 1100 | 0 |
JG785760 | 245 | 640 | 884 | 0 |
JG785760 | 46 | 324 | 369 | 0.057 |
JG785760 | 116 | 484 | 584 | 0.29 |
Sequence Alignments (This image is cropped. Click for full image.) |
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