| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si029141m |
| Family | GH28 |
| Protein Properties | Length: 670 Molecular Weight: 72838.1 Isoelectric Point: 10.7102 |
| Chromosome | Chromosome/Scaffold: 2 Start: 31994459 End: 31998598 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 278 | 631 | 0 |
| AAIAERGGGRLTVPVGRWLTAPFNLTSRMTLFLAAGAEILGVQDERYWPLMSPLPSYGYGREHKGPRYGSLIHGQDLKDVTITGNNGTINGQGQSWWVKF RRKQLNHTRGPLVQLMRSSNIIISNITLRDSPFWTLHTYDCKNVTISEATILAPIAGAPNTDGIDPDSCENVVIKNCYISVGDDGIAIKSGWDQYGIAYG RPSANIIIQNVVIRSMVSAGVSIGSEMSGGVSNVLVENVHVWDSRRGVRIKTAPGRGAYVSNISYRNISLEHVRVGIVIKTDYNEHPDEGFNPKAMPIIE NISYTSIHGQGVRVPVRIQGSAEIPVKNVTFQDMSVGIVDRKHHVFQCSFVQGQ | |||
| Full Sequence |
|---|
| Protein Sequence Length: 670 Download |
| MGALSCSSAR ARGCPSDRTN LSIVVIPAIR SCTWTKPSAP RTRAGSNRCA WARPNRIHHT 60 TGSGAHGRQT TITRRRAHHP TPRFLKLRPE PVLREPPNPP PPPGRASLPL PVFPHGPPRP 120 SRDRSTHRPV RAPRIDPTPV RRPDPMLETA AVSSPRAAAA AVTAAGAAAA AAAAASTAVS 180 SPRRGGGGAA HHHRRWAPAP YRACLVALWL VGFALVFLWQ STSVGRVRLY TRPPMPKRAA 240 SSSMGQWVAS PPVYDLREFG AFGDGRTVNT AAFEAAVAAI AERGGGRLTV PVGRWLTAPF 300 NLTSRMTLFL AAGAEILGVQ DERYWPLMSP LPSYGYGREH KGPRYGSLIH GQDLKDVTIT 360 GNNGTINGQG QSWWVKFRRK QLNHTRGPLV QLMRSSNIII SNITLRDSPF WTLHTYDCKN 420 VTISEATILA PIAGAPNTDG IDPDSCENVV IKNCYISVGD DGIAIKSGWD QYGIAYGRPS 480 ANIIIQNVVI RSMVSAGVSI GSEMSGGVSN VLVENVHVWD SRRGVRIKTA PGRGAYVSNI 540 SYRNISLEHV RVGIVIKTDY NEHPDEGFNP KAMPIIENIS YTSIHGQGVR VPVRIQGSAE 600 IPVKNVTFQD MSVGIVDRKH HVFQCSFVQG QVIGYVFPVP CKNLDVYNER RELVKQSTFQ 660 NISDIDYSF* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 7.0e-21 | 390 | 631 | 248 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-23 | 372 | 613 | 249 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 5.0e-23 | 258 | 641 | 401 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-36 | 372 | 613 | 248 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-53 | 253 | 571 | 341 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84640.1 | 0 | 185 | 669 | 35 | 526 | hypothetical protein OsI_31518 [Oryza sativa Indica Group] |
| GenBank | EEE69791.1 | 0 | 244 | 669 | 1 | 426 | hypothetical protein OsJ_29512 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063274.1 | 0 | 185 | 669 | 35 | 526 | Os09g0439400 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002277239.1 | 0 | 191 | 669 | 13 | 493 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002460269.1 | 0 | 180 | 669 | 27 | 518 | hypothetical protein SORBIDRAFT_02g025730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 8.40779e-45 | 255 | 610 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 8.40779e-45 | 255 | 610 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 8.40779e-45 | 255 | 610 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 8.40779e-45 | 255 | 610 | 29 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 5e-19 | 295 | 613 | 52 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
