| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si029144m |
| Family | GH51 |
| Protein Properties | Length: 669 Molecular Weight: 73244.8 Isoelectric Point: 7.5313 |
| Chromosome | Chromosome/Scaffold: 2 Start: 48824652 End: 48829560 |
| Description | alpha-L-arabinofuranosidase 1 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH51 | 212 | 540 | 0 |
| SQNNTNSRLQLTTSKSGVIWLDQVSVMPLDTYMGHGFRKDLSLMLANLKPQFLKFPGGNYAMGNYLRNAFWWSETVGPWEERPGHFNDAWGYWTDDGLGF FEFLQLAEDLGASPVWVVNDGASLNEEVSTATIASLVKDVVNGIEFARGGPKTPWGSVRVAMGHPQPFKLDYVSIGNQECWMLYYRGNYQKFYSAIKAAY PDINIISSCDRSTISPSNPADLYDVHVYTSSSNMFSRTSMFDNTPRSAPKAIVSEYAVTGNDAGKGTLVAALAEAAFLIGLERNSDVVEMASCAPLFVND NDRRWNPDAIVFNSWQHYGCPNYWMLHFF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 669 Download |
| MGVQRQRARA ASLLHALVVG CVLCWTLSAR CVEGQSQTGQ LSVDASPQNV RKIPDKMFGI 60 FFEEINHAGA GGLWAELVSN RGFEAGGPNT PSNIDPWLII GDESSIIVGT DRTSCFERNP 120 VALRMEVLCD SKRTNACPSG GVGVYNPGYW GMNIEKGKVY KVSLHIRSSD AVSLTVSLTS 180 SDGLQKLAAH TITGSKKSFA KWTKIEFHLK SSQNNTNSRL QLTTSKSGVI WLDQVSVMPL 240 DTYMGHGFRK DLSLMLANLK PQFLKFPGGN YAMGNYLRNA FWWSETVGPW EERPGHFNDA 300 WGYWTDDGLG FFEFLQLAED LGASPVWVVN DGASLNEEVS TATIASLVKD VVNGIEFARG 360 GPKTPWGSVR VAMGHPQPFK LDYVSIGNQE CWMLYYRGNY QKFYSAIKAA YPDINIISSC 420 DRSTISPSNP ADLYDVHVYT SSSNMFSRTS MFDNTPRSAP KAIVSEYAVT GNDAGKGTLV 480 AALAEAAFLI GLERNSDVVE MASCAPLFVN DNDRRWNPDA IVFNSWQHYG CPNYWMLHFF 540 KDSSGAALHP TTIQISNYDQ LVASAITWQN AKDKSTYLRI KVVNFGSRAV DLNVSVAGLA 600 NGIKKSGSKQ TVLTSSSPLD ENSFQQPEKV VPVSSPLANA KQQMGVSVRP YSLTSFDLLL 660 EPSKHASI* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam02018 | CBM_4_9 | 0.0008 | 75 | 224 | 153 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. |
| COG3534 | AbfA | 7.0e-7 | 478 | 652 | 189 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] |
| COG3534 | AbfA | 1.0e-25 | 247 | 389 | 143 | + Alpha-L-arabinofuranosidase [Carbohydrate transport and metabolism] |
| pfam06964 | Alpha-L-AF_C | 1.0e-40 | 465 | 652 | 205 | + Alpha-L-arabinofuranosidase C-terminus. This family represents the C-terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase (EC:3.2.1.55). This catalyzes the hydrolysis of nonreducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| smart00813 | Alpha-L-AF_C | 7.0e-53 | 465 | 652 | 198 | + Alpha-L-arabinofuranosidase C-terminus. This entry represents the C terminus (approximately 200 residues) of bacterial and eukaryotic alpha-L-arabinofuranosidase. This catalyses the hydrolysis of non-reducing terminal alpha-L-arabinofuranosidic linkages in L-arabinose-containing polysaccharides. |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| GO:0046373 | L-arabinose metabolic process |
| GO:0046556 | alpha-N-arabinofuranosidase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF95656.1 | 0 | 1 | 661 | 1 | 658 | Alpha-L-arabinofuranosidase C-terminus family protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACR35485.1 | 0 | 1 | 668 | 1 | 663 | unknown [Zea mays] |
| DDBJ | BAC10349.1 | 0 | 6 | 668 | 4 | 664 | putative arabinoxylan narabinofuranohydrolase isoenzyme AXAH-I [Oryza sativa Japonica Group] |
| GenBank | EEE58961.1 | 0 | 1 | 661 | 1 | 662 | hypothetical protein OsJ_10647 [Oryza sativa Japonica Group] |
| RefSeq | XP_002463418.1 | 0 | 1 | 668 | 1 | 666 | hypothetical protein SORBIDRAFT_02g043530 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3ug5_F | 6e-17 | 247 | 661 | 68 | 504 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ug5_E | 6e-17 | 247 | 661 | 68 | 504 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ug5_D | 6e-17 | 247 | 661 | 68 | 504 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ug5_C | 6e-17 | 247 | 661 | 68 | 504 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
| PDB | 3ug5_B | 6e-17 | 247 | 661 | 68 | 504 | B Chain B, Structural Basis Of Gibberellin(Ga3)-Induced Della Recognition By The Gibberellin Receptor |
