| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si029317m |
| Family | AA4 |
| Protein Properties | Length: 583 Molecular Weight: 63263.5 Isoelectric Point: 7.2037 |
| Chromosome | Chromosome/Scaffold: 2 Start: 3380566 End: 3387366 |
| Description | FAD-linked oxidases family protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| AA4 | 96 | 220 | 3.8e-21 |
| PREFIDELASFLGDNLTVDYEERSFHGTPQNSFHKAANVPDVVVFPSSQEEVQKIVMACNKYKIPIVPYGGATSIEGHTLAPHGGVCIDMTLMKKIKSLH IEDMDVVVEPGVGWIELNEYLKPYG | |||
| Full Sequence |
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| Protein Sequence Length: 583 Download |
| MAASLLRLSR PCRALLPLSS LRLPLSTQPQ PAPPAPAPSS TTSRRPRFLS FLAAAAAAAA 60 AAGGTTVALC DPGVDLRVGG KDSTELIVKG EHRRVPREFI DELASFLGDN LTVDYEERSF 120 HGTPQNSFHK AANVPDVVVF PSSQEEVQKI VMACNKYKIP IVPYGGATSI EGHTLAPHGG 180 VCIDMTLMKK IKSLHIEDMD VVVEPGVGWI ELNEYLKPYG LFFPLDPGKF LFLTSKFLIN 240 AVMIEVFIKC SIFRPGATIG GMCATRCSGS LAVRYGTMRD NVINLQAVLP NGDVVKTGSR 300 ARKSAAGYDL ARLIIGSEGT LGVITEVTLR LQKLPSHSVV AMCNFKTVKD AADVAIATML 360 SGIQVSRVEL LDEVQIRAIN MANGKNLPEV PTLMFEFIGT EAYALEQTLL VQKIANEHHG 420 SDFVFVEEPE AKTELWKIRK EALWAGFAMK PDHEAMITDV CVPLSRLAEC ISTSKQLLDA 480 SPLTCLVIAH AGDGNFHTII LFDPSKDDQR KEAERLNHFM VHTALSMEGT CTGEHGVGTG 540 KMKYLEKELG IESLRTMKRI KAALDPNNIM NPGKLIPPHV CI* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK11230 | PRK11230 | 7.0e-48 | 134 | 581 | 452 | + glycolate oxidase subunit GlcD; Provisional | ||
| pfam02913 | FAD-oxidase_C | 2.0e-67 | 334 | 575 | 247 | + FAD linked oxidases, C-terminal domain. This domain has a ferredoxin-like fold. | ||
| TIGR00387 | glcD | 1.0e-85 | 138 | 574 | 439 | + glycolate oxidase, subunit GlcD. This protein, the glycolate oxidase GlcD subunit, is similar in sequence to that of several D-lactate dehydrogenases, including that of E. coli. The glycolate oxidase has been found to have some D-lactate dehydrogenase activity [Energy metabolism, Other]. | ||
| COG0277 | GlcD | 1.0e-115 | 102 | 578 | 489 | + FAD/FMN-containing dehydrogenases [Energy production and conversion] | ||
| PLN02805 | PLN02805 | 0 | 63 | 582 | 521 | + D-lactate dehydrogenase [cytochrome] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0003824 | catalytic activity |
| GO:0008762 | UDP-N-acetylmuramate dehydrogenase activity |
| GO:0016491 | oxidoreductase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC81560.1 | 0 | 43 | 582 | 51 | 551 | hypothetical protein OsI_24999 [Oryza sativa Indica Group] |
| GenBank | EEE66611.1 | 0 | 69 | 582 | 71 | 548 | hypothetical protein OsJ_23188 [Oryza sativa Japonica Group] |
| RefSeq | NP_001142976.1 | 0 | 1 | 582 | 1 | 555 | hypothetical protein LOC100275430 [Zea mays] |
| RefSeq | XP_002461502.1 | 0 | 1 | 582 | 1 | 574 | hypothetical protein SORBIDRAFT_02g003640 [Sorghum bicolor] |
| RefSeq | XP_002524111.1 | 0 | 38 | 582 | 31 | 555 | d-lactate dehydrogenase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3pm9_F | 3e-36 | 98 | 576 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_E | 3e-36 | 98 | 576 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_D | 3e-36 | 98 | 576 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_C | 3e-36 | 98 | 576 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| PDB | 3pm9_B | 3e-36 | 98 | 576 | 16 | 476 | A Chain A, Crystal Structure Of A Putative Dehydrogenase (Rpa1076) From Rhodopseudomonas Palustris Cga009 At 2.57 A Resolution |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| photorespiration | RXN-969 | EC-1.1.3 | glycolate oxidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| JG888859 | 277 | 293 | 569 | 0 |
| FL811189 | 260 | 280 | 539 | 0 |
| EX265038 | 349 | 149 | 496 | 0 |
| FL984652 | 255 | 274 | 528 | 0 |
| EX440808 | 357 | 111 | 467 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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