y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si029378m |
Family | GH14 |
Protein Properties | Length: 564 Molecular Weight: 61964 Isoelectric Point: 4.8795 |
Chromosome | Chromosome/Scaffold: 2 Start: 42485434 End: 42487777 |
Description | beta-amylase 5 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 62 | 484 | 0 |
QLEVVTTENELEDAAGLRAQLRRLRAAGVDGVMVDVWWGIVEGAGPARYEWRAYRELFGIVQAEGLKLQAIMSFHACGGNVGDAVSIPIPRWVREVGEED PDVFYTSPIGERNREYLTIGVDDQPLFHGRTAIQLYADFMKSFRENMVDFLDSGLIVDIEVGLGPAGELRYPSYPEIQGWVFPGIGQFQCYDKYLAADFK AAATAAGHPEWELPVNAGEVNDTPEDTGFFAAEVGTYLTEQGRFFLTWYSSRLLEHGDRVLDEANRAFLGCEVKLAAKVSGIHWWYRHPSHAAELAAGYY NLPGRDGYGPIARVLARHDGAILNFTCAEMRDSEQPKAAMSAPEELVRQALSAGWREGIEVACENALTRYDRSGYNQMLRNARPNGVRRPGGGAGEPPTR RVAAVTYLRLSDELLAGNNFRVF |
Full Sequence |
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Protein Sequence Length: 564 Download |
MLGSSPSSQV KPQQWTACRS CVAASSPALP PPPVVAVARR TVASAPLRAI TAESAETSPV 60 QQLEVVTTEN ELEDAAGLRA QLRRLRAAGV DGVMVDVWWG IVEGAGPARY EWRAYRELFG 120 IVQAEGLKLQ AIMSFHACGG NVGDAVSIPI PRWVREVGEE DPDVFYTSPI GERNREYLTI 180 GVDDQPLFHG RTAIQLYADF MKSFRENMVD FLDSGLIVDI EVGLGPAGEL RYPSYPEIQG 240 WVFPGIGQFQ CYDKYLAADF KAAATAAGHP EWELPVNAGE VNDTPEDTGF FAAEVGTYLT 300 EQGRFFLTWY SSRLLEHGDR VLDEANRAFL GCEVKLAAKV SGIHWWYRHP SHAAELAAGY 360 YNLPGRDGYG PIARVLARHD GAILNFTCAE MRDSEQPKAA MSAPEELVRQ ALSAGWREGI 420 EVACENALTR YDRSGYNQML RNARPNGVRR PGGGAGEPPT RRVAAVTYLR LSDELLAGNN 480 FRVFRTFVRK MHADLDYCPD PARYGRPMRP LERSSPEIPM ERLLEATAPA PALPFDPETD 540 MSVGGGLAEA IDWVLGKIEW IFG* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02705 | PLN02705 | 3.0e-108 | 103 | 495 | 395 | + beta-amylase | ||
PLN02905 | PLN02905 | 9.0e-131 | 103 | 494 | 396 | + beta-amylase | ||
PLN00197 | PLN00197 | 2.0e-133 | 103 | 491 | 392 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 4.0e-147 | 103 | 491 | 392 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 62 | 563 | 502 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN28226.1 | 0 | 1 | 563 | 1 | 595 | unknown [Zea mays] |
EMBL | CAA76131.1 | 0 | 1 | 563 | 11 | 598 | beta-amylase [Triticum aestivum] |
GenBank | EEC82222.1 | 0 | 4 | 562 | 36 | 631 | hypothetical protein OsI_26370 [Oryza sativa Indica Group] |
RefSeq | NP_001059906.1 | 0 | 4 | 562 | 5 | 599 | Os07g0543100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002460819.1 | 0 | 1 | 563 | 1 | 604 | hypothetical protein SORBIDRAFT_02g035590 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 63 | 545 | 20 | 495 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
PDB | 1q6c_A | 0 | 63 | 545 | 20 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 63 | 545 | 20 | 495 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1v3i_A | 0 | 63 | 545 | 20 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
PDB | 1v3h_A | 0 | 63 | 545 | 20 | 495 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO777976 | 443 | 103 | 545 | 0 |
HO803971 | 389 | 133 | 521 | 0 |
HO782669 | 392 | 150 | 541 | 0 |
FL764721 | 269 | 246 | 514 | 0 |
GT625519 | 286 | 132 | 417 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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