| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si029669m |
| Family | CBM43 |
| Protein Properties | Length: 484 Molecular Weight: 52068.5 Isoelectric Point: 9.1203 |
| Chromosome | Chromosome/Scaffold: 2 Start: 36479406 End: 36483468 |
| Description | O-Glycosyl hydrolases family 17 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| CBM43 | 389 | 476 | 3.3e-28 |
| WCVLSAAASKKLNETAVGNALAYACGQGNGTCAAIQPGEKCYLPNTTVAHASYAFNSYWQQFRKTGATCYFNNLAEQTIKNPSHGSCK | |||
| GH17 | 38 | 362 | 0 |
| LGVNYGRVADDIPSPRRSVELLRAAGAGSVKIYDANPGVLRALAGTRWPVSIMVPNQIIPDIAASAAAADRWVAENLVPYYPATRVKFLLVGNEILSDYS IANSTWLRLVPAMENIHLSLRKRGISSVKIGTTLAMDALADGDFPRPPSAAAFRPDIAASVVRPLLHFLNGTNSYYFVDAYPYFVWAGHNLTVPLDYALF QGGHTRYVDPVTGLTYTNLLDEMLDAVTIAMAKLGYGRVKLAVAETGWPNGCDYDQIGGNVHNAAIYNRNLAARMAKNPGTPLRPGAKMPVFVFSLYNED LKGGPGTERHWGLYYANGTAVYPID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 484 Download |
| MAAAPPLRVR ALPLLLLLCA AFSFHAAHGV SGGGGHGLGV NYGRVADDIP SPRRSVELLR 60 AAGAGSVKIY DANPGVLRAL AGTRWPVSIM VPNQIIPDIA ASAAAADRWV AENLVPYYPA 120 TRVKFLLVGN EILSDYSIAN STWLRLVPAM ENIHLSLRKR GISSVKIGTT LAMDALADGD 180 FPRPPSAAAF RPDIAASVVR PLLHFLNGTN SYYFVDAYPY FVWAGHNLTV PLDYALFQGG 240 HTRYVDPVTG LTYTNLLDEM LDAVTIAMAK LGYGRVKLAV AETGWPNGCD YDQIGGNVHN 300 AAIYNRNLAA RMAKNPGTPL RPGAKMPVFV FSLYNEDLKG GPGTERHWGL YYANGTAVYP 360 IDLTGRRPLW SYPPLPALEN NTPYKGPIWC VLSAAASKKL NETAVGNALA YACGQGNGTC 420 AAIQPGEKCY LPNTTVAHAS YAFNSYWQQF RKTGATCYFN NLAEQTIKNP SHGSCKFRSS 480 LDS* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG5309 | COG5309 | 0.0002 | 274 | 354 | 84 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
| pfam07983 | X8 | 1.0e-16 | 389 | 463 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
| smart00768 | X8 | 1.0e-34 | 389 | 477 | 89 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. | ||
| pfam00332 | Glyco_hydro_17 | 1.0e-77 | 46 | 362 | 318 | + Glycosyl hydrolases family 17. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACN28576.1 | 0 | 150 | 483 | 1 | 334 | unknown [Zea mays] |
| GenBank | EEC84834.1 | 0 | 14 | 482 | 7 | 477 | hypothetical protein OsI_31928 [Oryza sativa Indica Group] |
| RefSeq | NP_001063586.1 | 0 | 27 | 482 | 23 | 480 | Os09g0502200 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001149815.1 | 0 | 19 | 483 | 16 | 478 | glucan endo-1,3-beta-glucosidase A6 [Zea mays] |
| RefSeq | XP_002462618.1 | 0 | 38 | 483 | 37 | 482 | hypothetical protein SORBIDRAFT_02g029080 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ghr_A | 0 | 38 | 363 | 1 | 306 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
| PDB | 1aq0_B | 0 | 38 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1aq0_A | 0 | 38 | 363 | 1 | 306 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
| PDB | 1ghs_B | 4.2039e-45 | 38 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
| PDB | 1ghs_A | 4.2039e-45 | 38 | 363 | 1 | 306 | A Chain A, The Three-Dimensional Structures Of Two Plant Beta-Glucan Endohydrolases With Distinct Substrate Specificities |
