| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si029777m |
| Family | GH28 |
| Protein Properties | Length: 462 Molecular Weight: 50542.5 Isoelectric Point: 8.2094 |
| Chromosome | Chromosome/Scaffold: 2 Start: 35552023 End: 35554357 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH28 | 54 | 386 | 0 |
| VDACAAAGGGRVLLPAPGNYLTATVHLRSRVVLEVAPGARLLGGTRQADYPPESRRWYVVLAENTTGAGVTGGGEINGQGGAFVVTPSEVKNVMVSWNTT GDCQLGDECRPRLVGFIDSKNVRIHDITLNQPAYWCLHLVRCDNTVIHNVSIFGDFNTPNNDGIDIEGSNNTVITNCHIDTGDDAICSKSSAGPVYNLTA ANCWIRTKSCAIKFGSQSSFSFKRLLFDNIMIVDSHRGLGMQIRDGGNVSDVVFSNIKMSTRYYHPLWWGRAEPIYITTCPRHPDSKEGTISDIRFINIS SVSENGVFLAGSKHGLLRNLKFKNVDLTYKRWT | |||
| Full Sequence |
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| Protein Sequence Length: 462 Download |
| MASPPLQLSA APLLLLLLVV VIRAARSSRV FSVVDYGAAG DGSRYDTAAI QAAVDACAAA 60 GGGRVLLPAP GNYLTATVHL RSRVVLEVAP GARLLGGTRQ ADYPPESRRW YVVLAENTTG 120 AGVTGGGEIN GQGGAFVVTP SEVKNVMVSW NTTGDCQLGD ECRPRLVGFI DSKNVRIHDI 180 TLNQPAYWCL HLVRCDNTVI HNVSIFGDFN TPNNDGIDIE GSNNTVITNC HIDTGDDAIC 240 SKSSAGPVYN LTAANCWIRT KSCAIKFGSQ SSFSFKRLLF DNIMIVDSHR GLGMQIRDGG 300 NVSDVVFSNI KMSTRYYHPL WWGRAEPIYI TTCPRHPDSK EGTISDIRFI NISSVSENGV 360 FLAGSKHGLL RNLKFKNVDL TYKRWTNYTG GLYDYRPGCQ EMVKHRTGGM MLEHISGLEI 420 DNVRMRWARG NLKGWDVNPL LFRPSTIDKL SFHDWQSVDV L* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 3.0e-11 | 95 | 256 | 162 | + Probable polygalacturonase At3g15720 | ||
| PLN02793 | PLN02793 | 1.0e-11 | 35 | 380 | 378 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-12 | 119 | 383 | 283 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-18 | 97 | 382 | 305 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-41 | 35 | 313 | 312 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC84787.1 | 0 | 29 | 460 | 25 | 455 | hypothetical protein OsI_31840 [Oryza sativa Indica Group] |
| GenBank | EEE69946.1 | 0 | 29 | 460 | 25 | 454 | hypothetical protein OsJ_29824 [Oryza sativa Japonica Group] |
| RefSeq | NP_001063526.1 | 0 | 29 | 460 | 25 | 450 | Os09g0487600 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001148969.1 | 0 | 24 | 460 | 21 | 456 | polygalacturonase [Zea mays] |
| RefSeq | XP_002462564.1 | 0 | 29 | 460 | 31 | 461 | hypothetical protein SORBIDRAFT_02g028280 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 3e-19 | 29 | 307 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 3e-19 | 29 | 307 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 3e-19 | 29 | 307 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 3e-19 | 29 | 307 | 26 | 343 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.00000000000004 | 20 | 312 | 146 | 487 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
