Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si030204m |
Family | CE8 |
Protein Properties | Length: 375 Molecular Weight: 39925.3 Isoelectric Point: 8.9384 |
Chromosome | Chromosome/Scaffold: 2 Start: 45339303 End: 45342197 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 77 | 368 | 0 |
IVVSQDGTGHSRTVQGAVDMVPAGNRRRVKILVRPGVYREKVTVPITKPFVSLIGMGTGRTVITWNARASDIDRSGHQVGTFYSASVAVEADYFCASHIT FENSAPAAPPGAVGQQAVALRLSGDKTMLYRCRILGTQDTLFDNIGRHYLYNCDIQGSIDFIFGNARSLYQGCTLHAVATSYGAIAASQRSSPTEDSGFS FVGCRLTGSGMLYLGRAWGRYARVVYSYCDLSGIVVPQGWSDWGDRTRTKTVLFGEYSCKGPGASTRQRVPWSRALTYEEARPFLGRSFING |
Full Sequence |
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Protein Sequence Length: 375 Download |
MAAAGCERRR CACAAVVVVL MFAASVSAAG GAADGFITWD DLSIPAAAVA APGGVSEGAM 60 GGGGAVKARA RHDLETIVVS QDGTGHSRTV QGAVDMVPAG NRRRVKILVR PGVYREKVTV 120 PITKPFVSLI GMGTGRTVIT WNARASDIDR SGHQVGTFYS ASVAVEADYF CASHITFENS 180 APAAPPGAVG QQAVALRLSG DKTMLYRCRI LGTQDTLFDN IGRHYLYNCD IQGSIDFIFG 240 NARSLYQGCT LHAVATSYGA IAASQRSSPT EDSGFSFVGC RLTGSGMLYL GRAWGRYARV 300 VYSYCDLSGI VVPQGWSDWG DRTRTKTVLF GEYSCKGPGA STRQRVPWSR ALTYEEARPF 360 LGRSFINGEE WLRL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02432 | PLN02432 | 1.0e-103 | 77 | 373 | 297 | + putative pectinesterase | ||
PLN02634 | PLN02634 | 5.0e-107 | 77 | 372 | 297 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 2.0e-107 | 76 | 372 | 299 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 2.0e-131 | 76 | 374 | 300 | + pectinesterase family protein | ||
PLN02671 | PLN02671 | 8.0e-140 | 77 | 374 | 300 | + pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC82420.1 | 0 | 35 | 374 | 32 | 399 | hypothetical protein OsI_26811 [Oryza sativa Indica Group] |
GenBank | EEE67559.1 | 0 | 35 | 374 | 32 | 398 | hypothetical protein OsJ_25062 [Oryza sativa Japonica Group] |
RefSeq | NP_001060235.1 | 0 | 35 | 326 | 32 | 324 | Os07g0607400 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463165.1 | 0 | 33 | 326 | 22 | 314 | hypothetical protein SORBIDRAFT_02g038910 [Sorghum bicolor] |
RefSeq | XP_002522727.1 | 0 | 8 | 374 | 25 | 383 | Pectinesterase U1 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 76 | 373 | 8 | 309 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2.8026e-45 | 78 | 373 | 6 | 305 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 5e-18 | 89 | 360 | 46 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 0.00000000000002 | 88 | 251 | 19 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.00000000000002 | 88 | 251 | 19 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |