| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si030939m |
| Family | GH33 |
| Protein Properties | Length: 247 Molecular Weight: 27754 Isoelectric Point: 5.3925 |
| Chromosome | Chromosome/Scaffold: 2 Start: 41772565 End: 41775685 |
| Description | BNR/Asp-box repeat family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH33 | 3 | 230 | 5.3e-27 |
| NPVLFQLPSRELLLFYKIGQEVQKWSGAMKRSLDGGITWSQREQLPPGILGPIKNKPFLLEDGRLLCGSSVESWNSWGAWLEVTKDAGRTWQKYGPICIE GEPLGVIQPVPYQTANGTIRMLLRSFETIGRVCMADSADEGVTWSYVHETELPNPNSGIDGVKMKDGRVLLAYNTFCRGTLKIAISLNDGDTWDEVMTLE DTKGMEFSYPAVIQTMDDLIHVTYTYNR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 247 Download |
| MWNPVLFQLP SRELLLFYKI GQEVQKWSGA MKRSLDGGIT WSQREQLPPG ILGPIKNKPF 60 LLEDGRLLCG SSVESWNSWG AWLEVTKDAG RTWQKYGPIC IEGEPLGVIQ PVPYQTANGT 120 IRMLLRSFET IGRVCMADSA DEGVTWSYVH ETELPNPNSG IDGVKMKDGR VLLAYNTFCR 180 GTLKIAISLN DGDTWDEVMT LEDTKGMEFS YPAVIQTMDD LIHVTYTYNR TQIKRVVLQP 240 SAMMKL* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00260 | Sialidase | 0.002 | 30 | 197 | 207 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| cd00260 | Sialidase | 3.0e-6 | 1 | 198 | 234 | + Sialidases or neuraminidases function to bind and hydrolyze terminal sialic acid residues from various glycoconjugates as well as playing roles in pathogenesis, bacterial nutrition and cellular interactions. They have a six-bladed, beta-propeller fold with the non-viral sialidases containing 2-5 Asp-box motifs (most commonly Ser/Thr-X-Asp-[X]-Gly-X-Thr- Trp/Phe). This CD includes eubacterial, eukaryotic, and viral sialidases. | ||
| COG4692 | COG4692 | 1.0e-20 | 2 | 240 | 294 | + Predicted neuraminidase (sialidase) [Carbohydrate transport and metabolism] | ||
| pfam13088 | BNR_2 | 2.0e-79 | 1 | 224 | 234 | + BNR repeat-like domain. This family of proteins contains BNR-like repeats suggesting these proteins may act as sialidases. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | EEC82140.1 | 0 | 1 | 234 | 179 | 412 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEC82140.1 | 0 | 1 | 243 | 468 | 684 | hypothetical protein OsI_26191 [Oryza sativa Indica Group] |
| GenBank | EEE67268.1 | 0 | 1 | 234 | 679 | 912 | hypothetical protein OsJ_24447 [Oryza sativa Japonica Group] |
| RefSeq | NP_001059779.1 | 0 | 1 | 245 | 179 | 423 | Os07g0516000 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002460769.1 | 0 | 1 | 245 | 162 | 411 | hypothetical protein SORBIDRAFT_02g034675 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 2jkb_A | 0.0005 | 30 | 165 | 449 | 574 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fq4_A | 0.0005 | 30 | 165 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpy_A | 0.0005 | 30 | 165 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpo_B | 0.0005 | 30 | 165 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| PDB | 4fpl_A | 0.0005 | 30 | 165 | 460 | 585 | A Chain A, Crystal Structure Of Streptococcus Pneumoniae Nanb In Complex With 2,7-Anhydro-Neu5ac |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
 | ||||
| Hit | Length | Start | End | EValue |
| FF344386 | 231 | 1 | 231 | 0 |
| HO308267 | 217 | 31 | 247 | 0 |
| JK588957 | 203 | 45 | 247 | 0 |
| FF595131 | 223 | 25 | 247 | 0 |
| JG834112 | 211 | 4 | 214 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
| Phylogeny |
|---|
 |