| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si032032m |
| Family | GH28 |
| Protein Properties | Length: 481 Molecular Weight: 51919.5 Isoelectric Point: 6.3403 |
| Chromosome | Chromosome/Scaffold: 2 Start: 8698551 End: 8701503 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 74 | 415 | 0 |
| ANKGGAQLFVPAGRWLTGSFSLISHLTLSLDKEAVILGSPDSSDWPVIDALPSYGRGRELPGKRHQSLIFGSNLTDVIITGANGTIDGQGAIWWDWFHNH TLNYTRPPLVELMYSTRVVISNLTFTNSPFWNIHPVYCSQVLVQHLTILAPISSPNTDGIDPDSSTNVCIEDCYIRNGDDIVVIKSGWDEYGISFAHPSS NISIRNITGQTRNSAGIALGSEMSGGISDVRAEGIRIVNSVHGIRIKTAPGRGGYVKNVYVADVSLENVSIAIRITGNYGEHPDENYNKNALPTISNITI KNIVGVNISVAGMLQGIQGDPFSNICLSNVSLSVRSTNPWNC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 481 Download |
| MSGSATIFRV LLVFATFVAQ TQWSSVSGMY CNDLTPSVER PHSASITDFG AVGDGVTLNT 60 KAFQNALFYL NSFANKGGAQ LFVPAGRWLT GSFSLISHLT LSLDKEAVIL GSPDSSDWPV 120 IDALPSYGRG RELPGKRHQS LIFGSNLTDV IITGANGTID GQGAIWWDWF HNHTLNYTRP 180 PLVELMYSTR VVISNLTFTN SPFWNIHPVY CSQVLVQHLT ILAPISSPNT DGIDPDSSTN 240 VCIEDCYIRN GDDIVVIKSG WDEYGISFAH PSSNISIRNI TGQTRNSAGI ALGSEMSGGI 300 SDVRAEGIRI VNSVHGIRIK TAPGRGGYVK NVYVADVSLE NVSIAIRITG NYGEHPDENY 360 NKNALPTISN ITIKNIVGVN ISVAGMLQGI QGDPFSNICL SNVSLSVRST NPWNCSLVEG 420 YSNSVLPEIC EQLRTSPGPG QVCYDGNSYP AAAAQPQSPQ KSSASRLLNP FLYISWFLCR 480 * 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 9.0e-27 | 37 | 428 | 407 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-27 | 40 | 382 | 357 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 4.0e-31 | 46 | 437 | 404 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-34 | 142 | 416 | 285 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-53 | 44 | 356 | 336 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACR35653.1 | 0 | 1 | 480 | 8 | 490 | unknown [Zea mays] |
| GenBank | EEC81792.1 | 0 | 1 | 477 | 30 | 505 | hypothetical protein OsI_25505 [Oryza sativa Indica Group] |
| GenBank | EEE66877.1 | 0 | 1 | 477 | 30 | 505 | hypothetical protein OsJ_23693 [Oryza sativa Japonica Group] |
| RefSeq | NP_001051812.1 | 0 | 1 | 475 | 1 | 474 | Os03g0833800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002459610.1 | 0 | 20 | 480 | 36 | 499 | hypothetical protein SORBIDRAFT_02g007470 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 5.00264e-43 | 42 | 428 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 5.00264e-43 | 42 | 428 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 5.00264e-43 | 42 | 428 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 5.00264e-43 | 42 | 428 | 26 | 420 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-18 | 88 | 410 | 52 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
