y
Basic Information | |
---|---|
Species | Setaria italica |
Cazyme ID | Si032033m |
Family | GH14 |
Protein Properties | Length: 525 Molecular Weight: 56304.5 Isoelectric Point: 7.1774 |
Chromosome | Chromosome/Scaffold: 2 Start: 47690524 End: 47692184 |
Description | beta-amylase 3 |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH14 | 76 | 488 | 0 |
FVGLPIDSVTDGATVNSAAAVAAGIRAVRLLGADGVELPVFWSVAQPESPDRFSWAGYLAVADMVRAEGLSLRVSLRAHGTPGAGVPTLPSWVSGVAADD PDIFFTDRSGGRHEGCLSFAIDELPVLHGRSPLQLYEAFFRGFAAAFDDFFDSTITDVTVGLGVHGALRYPSYPPGSDASKFIGVGEFQCYDKYMLAQLR QHAEEAGNAMWGLSGPHDAPRYHESPDSCGFFRERGGSWETTYGDFFLSWYAGQLVGHGDRVLGMAAAVFGGKPVALSAKIPFMHWWHGALSRPAEAAAG FYKSKKKNGYSPVAKMFARHGCTMIVPGMDVCMNKQHHSAGSSPDQLLKQIKNACRRHGARIAGENASLAMSHTSSFSRIRSNILTTELMRPCHFTYQRM GADFFSPDHFPQF |
Full Sequence |
---|
Protein Sequence Length: 525 Download |
MDTAPMLLQQ HAAAPASGRC LLGGRASPNR VAFRRSRQGA GGCRDLRAGG LGQFFGAGDH 60 SSKSHEVDDL APARLFVGLP IDSVTDGATV NSAAAVAAGI RAVRLLGADG VELPVFWSVA 120 QPESPDRFSW AGYLAVADMV RAEGLSLRVS LRAHGTPGAG VPTLPSWVSG VAADDPDIFF 180 TDRSGGRHEG CLSFAIDELP VLHGRSPLQL YEAFFRGFAA AFDDFFDSTI TDVTVGLGVH 240 GALRYPSYPP GSDASKFIGV GEFQCYDKYM LAQLRQHAEE AGNAMWGLSG PHDAPRYHES 300 PDSCGFFRER GGSWETTYGD FFLSWYAGQL VGHGDRVLGM AAAVFGGKPV ALSAKIPFMH 360 WWHGALSRPA EAAAGFYKSK KKNGYSPVAK MFARHGCTMI VPGMDVCMNK QHHSAGSSPD 420 QLLKQIKNAC RRHGARIAGE NASLAMSHTS SFSRIRSNIL TTELMRPCHF TYQRMGADFF 480 SPDHFPQFME FVRSVVCGEW DEDDAPGDED RAMAASGSAK AKAA* 540 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 3.0e-70 | 109 | 493 | 396 | + beta-amylase | ||
PLN02161 | PLN02161 | 5.0e-75 | 75 | 495 | 435 | + beta-amylase | ||
PLN02801 | PLN02801 | 1.0e-86 | 75 | 493 | 431 | + beta-amylase | ||
PLN00197 | PLN00197 | 4.0e-89 | 75 | 493 | 428 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 7.0e-107 | 75 | 495 | 432 | + beta-amylase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACN35504.1 | 0 | 1 | 524 | 1 | 528 | unknown [Zea mays] |
GenBank | ADD91317.1 | 0 | 68 | 511 | 78 | 514 | chloroplast beta-amylase [Musa acuminata AAA Group] |
GenBank | EAZ05063.1 | 0 | 6 | 519 | 7 | 517 | hypothetical protein OsI_27252 [Oryza sativa Indica Group] |
RefSeq | NP_001060573.1 | 0 | 27 | 519 | 28 | 517 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002463351.1 | 0 | 1 | 523 | 1 | 528 | hypothetical protein SORBIDRAFT_02g042220 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1fa2_A | 0 | 75 | 495 | 15 | 443 | A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato |
PDB | 1q6g_A | 0 | 61 | 492 | 2 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1q6d_A | 0 | 61 | 492 | 2 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1wdp_A | 0 | 61 | 492 | 2 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 1q6c_A | 0 | 61 | 492 | 2 | 438 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
HO781436 | 391 | 121 | 511 | 0 |
HO796964 | 376 | 136 | 511 | 0 |
EG631213 | 335 | 176 | 510 | 0 |
HO853900 | 361 | 147 | 505 | 0 |
HO781436 | 67 | 63 | 128 | 0.18 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|