| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si032233m |
| Family | GH28 |
| Protein Properties | Length: 418 Molecular Weight: 45127.7 Isoelectric Point: 9.9252 |
| Chromosome | Chromosome/Scaffold: 2 Start: 6940868 End: 6942393 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 67 | 401 | 0 |
| AAACSSSQSAVVLIPRGKRHLINHVTLSGPCKSSIMLMIEGTLMAPPKGSHWSKKTNRHWIMFNDVDGLTIAGGGTIDGNGKIWWQNSCKTNSRPPCKQA PTALTFYSCKNLKLENLKLVNSQQIHMSVEDCSHVKIARLSITAPGTSPNTDGIHITRSKHVQVRDCTIKTGDDCMSIEDGTENLHASNIVCGPGHGISI GSLGDRGSRAHVVNVTVDTAWLYGTANGARIKTWQGGRGYAKNIVFENMVMGDVRNPIVIDQNYCDSATPCRKQKSAVEVSNVLFKNIRGTSASKEAIKL RCSTSVPCHGITLENVKLTLKGGDGVAKSTCENAK | |||
| Full Sequence |
|---|
| Protein Sequence Length: 418 Download |
| MGSNIVVFLS ATLLVFFLWS VGADKDINGI TLRGRSLESK KVFNVRRYGA HGDGRHDDTR 60 SIAKTWAAAC SSSQSAVVLI PRGKRHLINH VTLSGPCKSS IMLMIEGTLM APPKGSHWSK 120 KTNRHWIMFN DVDGLTIAGG GTIDGNGKIW WQNSCKTNSR PPCKQAPTAL TFYSCKNLKL 180 ENLKLVNSQQ IHMSVEDCSH VKIARLSITA PGTSPNTDGI HITRSKHVQV RDCTIKTGDD 240 CMSIEDGTEN LHASNIVCGP GHGISIGSLG DRGSRAHVVN VTVDTAWLYG TANGARIKTW 300 QGGRGYAKNI VFENMVMGDV RNPIVIDQNY CDSATPCRKQ KSAVEVSNVL FKNIRGTSAS 360 KEAIKLRCST SVPCHGITLE NVKLTLKGGD GVAKSTCENA KWRKSGTVTP QPCTIGN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03003 | PLN03003 | 4.0e-90 | 39 | 401 | 368 | + Probable polygalacturonase At3g15720 | ||
| PLN02188 | PLN02188 | 9.0e-106 | 5 | 414 | 413 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-106 | 77 | 401 | 325 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-129 | 36 | 411 | 378 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 3.0e-131 | 37 | 413 | 377 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57273.1 | 0 | 1 | 406 | 1 | 416 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| DDBJ | BAC57275.1 | 0 | 6 | 417 | 5 | 405 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
| DDBJ | BAC57279.1 | 0 | 1 | 413 | 1 | 423 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EAZ39077.1 | 0 | 1 | 406 | 1 | 416 | hypothetical protein OsJ_23509 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 1 | 413 | 1 | 423 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-27 | 137 | 385 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 3e-19 | 135 | 357 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 3e-19 | 135 | 357 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 3e-19 | 135 | 357 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 3e-19 | 135 | 357 | 72 | 291 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
