| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si032719m |
| Family | GH28 |
| Protein Properties | Length: 474 Molecular Weight: 50053.4 Isoelectric Point: 8.5994 |
| Chromosome | Chromosome/Scaffold: 2 Start: 43122803 End: 43124470 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 141 | 443 | 0 |
| ARSQACSSAQPAVLLVPAGKSYFVKETSLSGPCKSKVTFKLEGTLQGHPHRVSFSNVDSLTVTGKGKTSWKNSCRRNHKMPCTFAPAALTFSSCNHLKVE NIKLLNAPQIHLWVESCSDVMLSRLTIASPGNSPENDGIHVAHSDGVRILGAKIKAGDDCISIAMGTTNLYATKIECGPGHGISVGSLGKGSTRAEVSNV TIDGAQFLNMVMNKVKNPIVIDQDYCTTSDPSKPKACSQKDSAAVEISNVEFSNIRGTSVARDASRLHCSEAFPCRGVVLRDIDLKTRRGGEKNATTSTC ENA | |||
| Full Sequence |
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| Protein Sequence Length: 474 Download |
| MVDHLTEHFI QEPDSEKLGI PIRSKEIHGG ESETKACPRG IKQGVTGRTN PPQQPSAAPA 60 LLLRSISNNA EAQTIARFRH RHGFAALAPR HGLPAPPAAP NAAWRRPRRS ASSATGVQFD 120 VGSFGAAGDG QTDDTGAFQN ARSQACSSAQ PAVLLVPAGK SYFVKETSLS GPCKSKVTFK 180 LEGTLQGHPH RVSFSNVDSL TVTGKGKTSW KNSCRRNHKM PCTFAPAALT FSSCNHLKVE 240 NIKLLNAPQI HLWVESCSDV MLSRLTIASP GNSPENDGIH VAHSDGVRIL GAKIKAGDDC 300 ISIAMGTTNL YATKIECGPG HGISVGSLGK GSTRAEVSNV TIDGAQFLNM VMNKVKNPIV 360 IDQDYCTTSD PSKPKACSQK DSAAVEISNV EFSNIRGTSV ARDASRLHCS EAFPCRGVVL 420 RDIDLKTRRG GEKNATTSTC ENAVLGETSN VSPAPCSSAA TKDDLVPLGS EDV* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 2.0e-57 | 145 | 456 | 351 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 3.0e-65 | 141 | 456 | 356 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-76 | 146 | 456 | 348 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-80 | 140 | 461 | 363 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-81 | 140 | 453 | 355 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| DDBJ | BAC57273.1 | 0 | 117 | 443 | 51 | 410 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| DDBJ | BAC57275.1 | 0 | 119 | 456 | 31 | 401 | putative polygalacturonase precursor [Oryza sativa Japonica Group] |
| DDBJ | BAC57279.1 | 0 | 106 | 461 | 41 | 428 | putative polygalacturonase PG1 [Oryza sativa Japonica Group] |
| GenBank | EEC81719.1 | 0 | 106 | 461 | 41 | 428 | hypothetical protein OsI_25337 [Oryza sativa Indica Group] |
| RefSeq | XP_002466242.1 | 0 | 119 | 458 | 75 | 450 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1rmg_A | 0.00000000003 | 123 | 430 | 25 | 343 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1bhe_A | 0.000000006 | 226 | 365 | 151 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 2iq7_G | 0.000000006 | 231 | 408 | 102 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 0.000000006 | 231 | 408 | 102 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_E | 0.000000006 | 231 | 408 | 102 | 301 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EE091344 | 253 | 201 | 429 | 0 |
| EE093402 | 256 | 190 | 415 | 0 |
| EC945774 | 255 | 204 | 434 | 0 |
| AJ559946 | 224 | 140 | 347 | 0 |
| AW442241 | 231 | 217 | 423 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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