Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si033221m |
Family | CBM43 |
Protein Properties | Length: 504 Molecular Weight: 52865.8 Isoelectric Point: 3.8268 |
Chromosome | Chromosome/Scaffold: 2 Start: 39982260 End: 39984274 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 417 | 498 | 2e-33 |
WCVAKPSVPGPIVQQAMDYACGSGADCDSIQPSGPCFRPDTMLSHASFAFNSYWQRTKASGATCDFGGTAMLITKDPSYDGC |
Full Sequence |
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Protein Sequence Length: 504 Download |
MEKSRGYLRP LRLLFVLFIA FAFVARCGGA RMLRPEELLR HHHSSSDPYY STPVMPPYGD 60 VFGGTPNPPP PPGSPNCGLT PDAPPPPLPI TVPAPAFVYS SPPPPEPDYY YPPPPYIIPS 120 PPPTEDTPPL PPIVYPSPPE VTPSPPEVAP YPSPPEVAPS PPEIAPYPSP PPEVAPYPSP 180 SPPEIAPSPP EGTPIIYPSP PEVTPSPPEI APYPSPSPPE ISPSPPEIVP SPPEIVPSPP 240 SYEPTPPSIV PSPPEYAPEP PTYEPSPPEY APEPPTYVPS PPAYYAPEPP ELVPSPPEYA 300 PEPPTYEPSP PIYAPYPPGI IPSPPEYAPE PPGSVPSPPE FAPEPPGSVP SPPEFAPEPP 360 GPPIYAPYPP GIVPGPPENA PEPPGAVPSP GGGGFLPPVV FPPPFATPSP GTVGSEWCVA 420 KPSVPGPIVQ QAMDYACGSG ADCDSIQPSG PCFRPDTMLS HASFAFNSYW QRTKASGATC 480 DFGGTAMLIT KDPSYDGCHY ILM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 4.0e-22 | 417 | 487 | 80 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-39 | 417 | 500 | 84 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC85055.1 | 0 | 8 | 501 | 5 | 503 | hypothetical protein OsI_32389 [Oryza sativa Indica Group] |
GenBank | EEE70222.1 | 0 | 1 | 503 | 1 | 536 | hypothetical protein OsJ_30336 [Oryza sativa Japonica Group] |
RefSeq | XP_002312230.1 | 0 | 287 | 503 | 78 | 301 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002462835.1 | 0 | 417 | 503 | 1 | 87 | hypothetical protein SORBIDRAFT_02g032805 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 2e-17 | 407 | 500 | 4 | 96 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |