| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si034299m |
| Family | GT5 |
| Protein Properties | Length: 807 Molecular Weight: 89899.3 Isoelectric Point: 5.3987 |
| Chromosome | Chromosome/Scaffold: 9 Start: 19026654 End: 19035396 |
| Description | starch synthase 2 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| GT5 | 327 | 799 | 0 |
| GVGVCGLGDVAGALPKALARRGHRVMVVVPKYGDYMELQEIGEPRRYQVAGQDMEVKYYHAYIDGVDFVFIDNPIFQHVESEIYGGNRTDILKRMVLLCK TAVEVQWYVPCGGFCYGDGNLVFIANDWHTALLPVYLKAYYRDNGFMTYARSVLVIHNIAHQGRGPIDDFSYLDLPGHYMDQFKLYDPFGGDHLNIFAAG IKAADRFLTVSHGYAWELKTPDGGWGLHSIISENDWKFQGIVNGIDTTDWNPRHDVHLQSDGYTNYSLETVQTGKAQCKEALQKELGLPVRGDVPVIAFI GRLDHQKGVDLIAEAMPWIAGQDVQLIMLGTGRQDLEDTLRRLESQHYDRVRGWVGFSVQLAHRMTAGADVLLMPSRFEPCGLNQLYAMMYGTVPVVHAV GGLRDTVQHYNPYEEVGVGWTFEKAEANRMIDALGHCLNTYRNYRNSWEGIQRRGMMQDLSWDNAAKLYEEVL | |||
| Full Sequence |
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| Protein Sequence Length: 807 Download |
| MATSTFLVAP ALLRPRGASP PAACGCCRRC SAPRGGHVPR PSARASSSCR SPPCAQPVSL 60 CLNVGAGWPM VLRGSTGRRF QKGLSAAATD ADAASQVDDD DEDMVRVTNE ALRATIRKSK 120 EVLARHKVIL EQISEKKKLI SVLAESSIHN EQEPHNDQSD SSFSRLNAVS EGEEINYGRQ 180 MYLDTHAQQS EFYTTYGESI YDQSEYYESL EDEDTDFSES FGEANYGNHY QYDRFPRAAP 240 SVYQPEAANG MDHHYVAQIS QVREKDLSVN EGANGNSSAS GGVDVMNVIL VAAECAPCMD 300 IIYPVCMLFL SAYQMLERIG VCGGWIGVGV CGLGDVAGAL PKALARRGHR VMVVVPKYGD 360 YMELQEIGEP RRYQVAGQDM EVKYYHAYID GVDFVFIDNP IFQHVESEIY GGNRTDILKR 420 MVLLCKTAVE VQWYVPCGGF CYGDGNLVFI ANDWHTALLP VYLKAYYRDN GFMTYARSVL 480 VIHNIAHQGR GPIDDFSYLD LPGHYMDQFK LYDPFGGDHL NIFAAGIKAA DRFLTVSHGY 540 AWELKTPDGG WGLHSIISEN DWKFQGIVNG IDTTDWNPRH DVHLQSDGYT NYSLETVQTG 600 KAQCKEALQK ELGLPVRGDV PVIAFIGRLD HQKGVDLIAE AMPWIAGQDV QLIMLGTGRQ 660 DLEDTLRRLE SQHYDRVRGW VGFSVQLAHR MTAGADVLLM PSRFEPCGLN QLYAMMYGTV 720 PVVHAVGGLR DTVQHYNPYE EVGVGWTFEK AEANRMIDAL GHCLNTYRNY RNSWEGIQRR 780 GMMQDLSWDN AAKLYEEVLV AAKYQW* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PRK14099 | PRK14099 | 2.0e-75 | 335 | 803 | 486 | + glycogen synthase; Provisional | ||
| COG0297 | GlgA | 7.0e-122 | 335 | 804 | 485 | + Glycogen synthase [Carbohydrate transport and metabolism] | ||
| PRK00654 | glgA | 3.0e-151 | 286 | 799 | 526 | + glycogen synthase; Provisional | ||
| cd03791 | GT1_Glycogen_synthase_DULL1_like | 4.0e-180 | 335 | 799 | 473 | + This family is most closely related to the GT1 family of glycosyltransferases. Glycogen synthase catalyzes the formation and elongation of the alpha-1,4-glucose backbone using ADP-glucose, the second and key step of glycogen biosynthesis. This family includes starch synthases of plants, such as DULL1 in Zea mays and glycogen synthases of various organisms. | ||
| TIGR02095 | glgA | 0 | 286 | 802 | 521 | + glycogen/starch synthase, ADP-glucose type. This family consists of glycogen (or starch) synthases that use ADP-glucose (EC 2.4.1.21), rather than UDP-glucose (EC 2.4.1.11) as in animals, as the glucose donor. This enzyme is found in bacteria and plants. Whether the name given is glycogen synthase or starch synthase depends on context, and therefore on substrate [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0009058 | biosynthetic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABY27639.1 | 0 | 2 | 806 | 5 | 742 | starch synthase IIc precursor [Triticum aestivum] |
| GenBank | ABY27640.1 | 0 | 25 | 806 | 28 | 765 | starch synthase IIc precursor [Sorghum bicolor] |
| GenBank | ACY56170.1 | 0 | 11 | 806 | 45 | 749 | soluble starch synthase II-1 [Oryza sativa Japonica Group] |
| GenBank | ACY56176.1 | 0 | 11 | 806 | 45 | 749 | soluble starch synthase II-1 [Oryza sativa Indica Group] |
| RefSeq | NP_001108120.1 | 0 | 1 | 806 | 7 | 775 | starch synthase IIc precursor [Zea mays] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3vuf_A | 0 | 341 | 800 | 36 | 509 | A Chain A, Crystal Structure Of 1,2-A-L-Fucosidase From Bifidobacterium Bifidum (Apo Form) |
| PDB | 3vue_A | 0 | 341 | 800 | 36 | 509 | A Chain A, Crystal Structure Of Rice Granule Bound Starch Synthase I Catalytic Domain |
| PDB | 3d1j_A | 0 | 332 | 798 | 18 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 3guh_A | 0 | 332 | 798 | 18 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| PDB | 2r4u_A | 0 | 332 | 798 | 18 | 472 | A Chain A, Crystal Structure Of E.Coli Gs Mutant Dmgs(C7s;c40 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch biosynthesis | GLYCOGENSYN-RXN | EC-2.4.1.21 | starch synthase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| HO781048 | 403 | 405 | 807 | 0 |
| HO777841 | 312 | 496 | 807 | 0 |
| HO777841 | 391 | 114 | 497 | 0 |
| HO445868 | 437 | 371 | 807 | 0 |
| CK210330 | 378 | 401 | 778 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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