Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si034773m |
Family | CBM43 |
Protein Properties | Length: 605 Molecular Weight: 62546.2 Isoelectric Point: 7.8966 |
Chromosome | Chromosome/Scaffold: 9 Start: 1222776 End: 1225248 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 421 | 502 | 2e-34 |
WCVAKTGLTDLAMQDGIDYACGMGGADCSAIQPMGSCYNPNTLQAHASYAFNSYFQKNPSPASCDFGGAGMLVNVNPSSGTC |
Full Sequence |
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Protein Sequence Length: 605 Download |
MAATRPLALT FFFCCILLLE TICCSGAFVE LSYDSTQVKI PSSSVITECR VMVTEKQHAY 60 LFLKPFECRP KSCRPEHVAG SFVNEVLDPN RQLNISNIVV TATKRKLGRL RRTLQSIHAS 120 LGAAGLAQSV RVSPELMLSS LRIMAKDRAH KKQWSKIRES VRRSGSFVQV KIEAEANSEL 180 AVAAEIQEAV ADVAALLGSD AGVVLHLKSR AAPSAVAMAK LVGDISREKR LLGVLVDVSS 240 PRRELGEARA TAHDEFSPVT NPAATPVTNP VTVPATNPVS NPMSPGFVTV PSTNPGDNGF 300 STNPNLPPLY PEPTTPATMP DPTTMPPSMV PTPFTSPVTA PTMPGPVTNP AAPVTNPATT 360 PTQFPGTSPV TNPVTTYPYP QQGGAAGAGG IPTAPVYQPP ATMPGTVQPS APAVAGAGQT 420 WCVAKTGLTD LAMQDGIDYA CGMGGADCSA IQPMGSCYNP NTLQAHASYA FNSYFQKNPS 480 PASCDFGGAG MLVNVNPSSG TCMYQTSSSG FGAGYSPGAT GTVPTGYTPG MSGAVPTGYS 540 PGWQGGVGGG SGSTVLNANN PGGNSMYGGS DNPTGLTAGA APLSCGWVLC LIWMVTFAFV 600 KEKV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-20 | 420 | 491 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-38 | 420 | 504 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF99731.1 | 0 | 1 | 604 | 1 | 575 | expressed protein [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN28117.1 | 0 | 2 | 604 | 3 | 587 | unknown [Zea mays] |
GenBank | ACN28414.1 | 0 | 2 | 604 | 3 | 613 | unknown [Zea mays] |
RefSeq | NP_001142611.1 | 0 | 2 | 604 | 3 | 610 | hypothetical protein LOC100274879 [Zea mays] |
RefSeq | XP_002463588.1 | 0 | 1 | 604 | 1 | 615 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 8e-17 | 417 | 509 | 9 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |