| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si034867m |
| Family | CBM22 |
| Protein Properties | Length: 580 Molecular Weight: 63013.2 Isoelectric Point: 5.8131 |
| Chromosome | Chromosome/Scaffold: 9 Start: 53606663 End: 53609363 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM22 | 54 | 170 | 4.1e-21 |
| ILRNADFNAGLRGWSPFGYSSIAESKSAAGNGFAVALNRTRPYQSVSQKVYLQGDTHYTLSAWLQVGDGSADVRAVVKTVGDFVHAGGVVAKAGCWSMLK GGLTAASSGPAELYFES | |||
| GH10 | 230 | 491 | 0 |
| RTSFPLGAAMSSHILTNSAYQAWFASRFAVATFENEMKWYSTEPAPGREDYTVPDAMMAFAKSNGIAVRGHNVFWDQPSQQPKWVQSLPYPQLLAAASRR IRSVVSRYAGQVIGWDVVNENLHFSFYEGRFGWDASTAFYAAARLLDTGNALMFMNEFNTLEQPGDMAALPDRYLQRLRQIVAAYPENGAGMAIGLEGHF TNPNIPYMRAALDTLAQAGIPIWLTEVDVAGSPAQAQHLEEVLREAYAHPAVQGIVLWSAWR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 580 Download |
| MTKVAGGLMM AKLAFWLGWI ALLQGCMVKA LPYDYSASIE CLPEPLEPQY GGGILRNADF 60 NAGLRGWSPF GYSSIAESKS AAGNGFAVAL NRTRPYQSVS QKVYLQGDTH YTLSAWLQVG 120 DGSADVRAVV KTVGDFVHAG GVVAKAGCWS MLKGGLTAAS SGPAELYFES NATVDLWVDS 180 VSLNPFSKVE WEAHRAESVV SARKKTVRLQ ATDSAGKPLA GAAVSLDAVR TSFPLGAAMS 240 SHILTNSAYQ AWFASRFAVA TFENEMKWYS TEPAPGREDY TVPDAMMAFA KSNGIAVRGH 300 NVFWDQPSQQ PKWVQSLPYP QLLAAASRRI RSVVSRYAGQ VIGWDVVNEN LHFSFYEGRF 360 GWDASTAFYA AARLLDTGNA LMFMNEFNTL EQPGDMAALP DRYLQRLRQI VAAYPENGAG 420 MAIGLEGHFT NPNIPYMRAA LDTLAQAGIP IWLTEVDVAG SPAQAQHLEE VLREAYAHPA 480 VQGIVLWSAW RPEGCYVMCL TDNNFKNLPQ GDVVDRLIAE WRAAPRAGAT DEQGFFEADL 540 VHGEYKVTVS HPALNNSVSR SVKVELGSGS ENYFVDIQV* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam02018 | CBM_4_9 | 7.0e-6 | 52 | 170 | 129 | + Carbohydrate binding domain. This family includes diverse carbohydrate binding domains. | ||
| COG3693 | XynA | 2.0e-26 | 214 | 487 | 297 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 2.0e-43 | 233 | 506 | 300 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 2.0e-65 | 266 | 514 | 275 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| GO:0016798 | hydrolase activity, acting on glycosyl bonds |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94504.1 | 0 | 10 | 577 | 1 | 567 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ACG36704.1 | 0 | 8 | 579 | 1 | 576 | 1,4-beta-xylanase [Zea mays] |
| GenBank | ACL53134.1 | 0 | 41 | 579 | 16 | 555 | unknown [Zea mays] |
| RefSeq | NP_001130600.1 | 0 | 8 | 579 | 20 | 595 | hypothetical protein LOC100191699 [Zea mays] |
| RefSeq | XP_002468320.1 | 0 | 1 | 579 | 1 | 573 | hypothetical protein SORBIDRAFT_01g043760 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nq6_A | 3e-27 | 235 | 514 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0n_A | 4e-24 | 235 | 506 | 16 | 290 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0m_A | 4e-24 | 235 | 506 | 16 | 290 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0l_A | 4e-24 | 235 | 506 | 16 | 290 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1v0k_A | 4e-24 | 235 | 506 | 16 | 290 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
