y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si034946m |
Family | GH14 |
Protein Properties | Length: 564 Molecular Weight: 61042.9 Isoelectric Point: 5.4828 |
Chromosome | Chromosome/Scaffold: 9 Start: 56513552 End: 56516833 |
Description | beta-amylase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 102 | 519 | 0 |
FVMMPLDTVRKDGNSLNRRRAVEASLAALKSAGVEGIMVDVWWGIAEAEGPGQYNFNGYMELMEMARKNGLKVQAVMSFHQCGGNVGDSVTIPLPKWVLE EMDKDQDLAYTDRSGRRNYEYVSLGCDALPVLKGRTPIQCYADFMRAFRDHFATYMGNTIVEIQVGMGPAGELRYPSYPESNGTWSFPGIGEFQCYDRYM LSSLKAAAEAVGKPEWGNAGPGDSGSYKDWPEDTPFFRREGGWNTEYGQFFMSWYSQMLLEHGERILSAATGVFTASPGVKISVKVAGIHWHYGTRSHAA ELTAGYYNTRHHDGYQPIARMLGRHGAVLNFTCVEMRDHEQPQDAQCRPEALVQQVALAARDAGVGLAGENALPRYDETAHDQVVATAAEKAEEERMVAF TYLRMGPDLFQPDNWRRF |
Full Sequence |
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Protein Sequence Length: 564 Download |
MMALNLAHQT GAAAAVAAAV PAAPRSAVVA AAATVASPST APSSAPALQA QTLTVDPAPV 60 QATDSVKSDL AMACQALVEA APEAEHADVA AELKSKAGVP VFVMMPLDTV RKDGNSLNRR 120 RAVEASLAAL KSAGVEGIMV DVWWGIAEAE GPGQYNFNGY MELMEMARKN GLKVQAVMSF 180 HQCGGNVGDS VTIPLPKWVL EEMDKDQDLA YTDRSGRRNY EYVSLGCDAL PVLKGRTPIQ 240 CYADFMRAFR DHFATYMGNT IVEIQVGMGP AGELRYPSYP ESNGTWSFPG IGEFQCYDRY 300 MLSSLKAAAE AVGKPEWGNA GPGDSGSYKD WPEDTPFFRR EGGWNTEYGQ FFMSWYSQML 360 LEHGERILSA ATGVFTASPG VKISVKVAGI HWHYGTRSHA AELTAGYYNT RHHDGYQPIA 420 RMLGRHGAVL NFTCVEMRDH EQPQDAQCRP EALVQQVALA ARDAGVGLAG ENALPRYDET 480 AHDQVVATAA EKAEEERMVA FTYLRMGPDL FQPDNWRRFA AFVKRMSGAG KRDMCREQVE 540 REASGVAHAT QPLVQEAAVA LTN* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 4.0e-139 | 99 | 528 | 436 | + beta-amylase | ||
pfam01373 | Glyco_hydro_14 | 1.0e-145 | 102 | 522 | 431 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN00197 | PLN00197 | 0 | 2 | 563 | 575 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 0 | 94 | 532 | 439 | + beta-amylase | ||
PLN02801 | PLN02801 | 0 | 99 | 526 | 435 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACG29617.1 | 0 | 2 | 563 | 1 | 572 | beta-amylase [Zea mays] |
GenBank | EAY88485.1 | 0 | 2 | 563 | 1 | 556 | hypothetical protein OsI_09956 [Oryza sativa Indica Group] |
RefSeq | NP_001048926.1 | 0 | 1 | 563 | 1 | 557 | Os03g0141200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001148159.1 | 0 | 1 | 563 | 1 | 573 | beta-amylase [Zea mays] |
RefSeq | XP_002468533.1 | 0 | 1 | 563 | 1 | 564 | hypothetical protein SORBIDRAFT_01g047500 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 99 | 553 | 12 | 461 | A Chain A, Crystal Structure Of A Native Endo Beta-1,3-Glucanase (Hev B 2), A Major Allergen From Hevea Brasiliensis |
PDB | 1q6c_A | 0 | 99 | 553 | 12 | 461 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 99 | 553 | 12 | 461 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1ukp_D | 0 | 99 | 535 | 12 | 448 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_C | 0 | 99 | 535 | 12 | 448 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO779314 | 408 | 159 | 561 | 0 |
HO826564 | 406 | 156 | 557 | 0 |
BU103692 | 437 | 96 | 532 | 0 |
FL714440 | 268 | 93 | 360 | 0 |
HO593646 | 442 | 121 | 558 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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