y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si034947m |
Family | GH14 |
Protein Properties | Length: 564 Molecular Weight: 59561.1 Isoelectric Point: 6.33 |
Chromosome | Chromosome/Scaffold: 9 Start: 46359875 End: 46362007 |
Description | beta-amylase 3 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 126 | 516 | 0 |
FVGLPADVVVSDGRGVCRPRAVSAALRALKLLGVDGVELPVSWAAVQPGPGGWFEWAGYRAIAAMVCDAGLDLRVSLRTDGDALPEWVADAAAADPDVLF TDRSGHRREGCLSFAVDELPVLLGKSPLEAYEAFFRSFADEFNDLLGSTITDVTVSLGPNGELRYPSYPPGNNGSADGYSGVGEFQCYDMYMLARLKRHA ESSGQPLWGLSGPHDGPRYDESPESSAFFREPGGSWNTAYGEFFLSWYAGELLAHGDRVLAAASRAFAGKPVELSAKVPLLCGSRPAAEVTAGLHGGYVP VAKMFARHGCTVIACGVDARLDARAEEHLARVKAACAERGARLAAESAPLAVARDGAGATGVWLSAGRTRPRQFTYQRMGADFFSPGHWPL |
Full Sequence |
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Protein Sequence Length: 564 Download |
MEVKIHQYYY HRANTHQAKR PRKVQSAASP SADVVSSSGR QPMEAVLMQR AAAAQARWGC 60 VGEAAMAGAG QQSAGVVRLG AARRAAGGAV RASRLGPVRA HVSAERSMEA AGEGLVVEEE 120 DAVRLFVGLP ADVVVSDGRG VCRPRAVSAA LRALKLLGVD GVELPVSWAA VQPGPGGWFE 180 WAGYRAIAAM VCDAGLDLRV SLRTDGDALP EWVADAAAAD PDVLFTDRSG HRREGCLSFA 240 VDELPVLLGK SPLEAYEAFF RSFADEFNDL LGSTITDVTV SLGPNGELRY PSYPPGNNGS 300 ADGYSGVGEF QCYDMYMLAR LKRHAESSGQ PLWGLSGPHD GPRYDESPES SAFFREPGGS 360 WNTAYGEFFL SWYAGELLAH GDRVLAAASR AFAGKPVELS AKVPLLCGSR PAAEVTAGLH 420 GGYVPVAKMF ARHGCTVIAC GVDARLDARA EEHLARVKAA CAERGARLAA ESAPLAVARD 480 GAGATGVWLS AGRTRPRQFT YQRMGADFFS PGHWPLFVQF VRALECPEEA HEDDLPGGIA 540 GGERLTVPSA SAVQGDARAV QTV* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 3.0e-48 | 151 | 452 | 322 | + beta-amylase | ||
PLN02801 | PLN02801 | 2.0e-57 | 125 | 434 | 332 | + beta-amylase | ||
PLN02161 | PLN02161 | 3.0e-58 | 125 | 524 | 445 | + beta-amylase | ||
PLN00197 | PLN00197 | 5.0e-74 | 125 | 531 | 439 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 9.0e-82 | 125 | 547 | 451 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF95933.1 | 0 | 43 | 561 | 1 | 520 | Glycosyl hydrolase family 14 protein, expressed [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001050116.1 | 0 | 173 | 561 | 305 | 692 | Os03g0351300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001060573.1 | 0 | 77 | 534 | 32 | 507 | Os07g0667100 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001151271.1 | 0 | 57 | 563 | 19 | 537 | beta-amylase [Zea mays] |
RefSeq | XP_002467860.1 | 0 | 57 | 549 | 16 | 510 | hypothetical protein SORBIDRAFT_01g035370 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1q6g_A | 0 | 121 | 529 | 10 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
PDB | 1q6d_A | 0 | 121 | 529 | 10 | 446 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum |
PDB | 2dqx_A | 0 | 121 | 529 | 10 | 446 | A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean |
PDB | 1wdq_A | 0 | 121 | 529 | 10 | 446 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
PDB | 1q6f_A | 0 | 121 | 529 | 10 | 446 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FL749726 | 290 | 225 | 514 | 0 |
FL869001 | 274 | 225 | 498 | 0 |
EC882298 | 264 | 293 | 549 | 0 |
FL890384 | 228 | 285 | 512 | 0 |
FL890384 | 25 | 511 | 535 | 0.0000006 |
Sequence Alignments (This image is cropped. Click for full image.) |
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