y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si034983m |
Family | GH14 |
Protein Properties | Length: 558 Molecular Weight: 60155.8 Isoelectric Point: 6.204 |
Chromosome | Chromosome/Scaffold: 9 Start: 36577745 End: 36580943 |
Description | chloroplast beta-amylase |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 95 | 506 | 0 |
YVMLPLDTVGPGGQLSRQRAVAASLMALRGAGVEGVMVDVWWGVVEREGPGRYDWEAYAELVRMVERAGLRLQAVMSFHQCGGNVGDTCNIPLPPWVLEE MSSNPDIVYTDRSGRRNPEYISLGCDTLPVLKGRTPIQVYADYMRSFHDRFRDYLGNVIAEIQVGMGPCGELRYPSYPEANGTWRFPGIGEFQCYDKYMR ASLEAAAVAAGHEEWGRGGPHDAGEYKQMPEETGFFRRDGTWSTEYGQFFLEWYSGMLLEHGDRVLAAADAVFGGTGATLSAKVAGIHWHYGTRSHAAEL TAGYYNTRHHDGYAPIARMLAKRGAVLNFTCMEMKDEQQPQHASCSPEQLVQQVKAAASAAGVELAGENALERYDEAAFSQVVSTARGAGLAAFTYLRMN KALFDGDNWREF |
Full Sequence |
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Protein Sequence Length: 558 Download |
MALTLRSTTS FLSPVDPNSK LLHKPGADDA PPSCAAVPAP SHAAAPSRRL RLVRAAAAAA 60 PAPAMDRAPA EAAELLHGGA AGQDHGRPRG GVPVYVMLPL DTVGPGGQLS RQRAVAASLM 120 ALRGAGVEGV MVDVWWGVVE REGPGRYDWE AYAELVRMVE RAGLRLQAVM SFHQCGGNVG 180 DTCNIPLPPW VLEEMSSNPD IVYTDRSGRR NPEYISLGCD TLPVLKGRTP IQVYADYMRS 240 FHDRFRDYLG NVIAEIQVGM GPCGELRYPS YPEANGTWRF PGIGEFQCYD KYMRASLEAA 300 AVAAGHEEWG RGGPHDAGEY KQMPEETGFF RRDGTWSTEY GQFFLEWYSG MLLEHGDRVL 360 AAADAVFGGT GATLSAKVAG IHWHYGTRSH AAELTAGYYN TRHHDGYAPI ARMLAKRGAV 420 LNFTCMEMKD EQQPQHASCS PEQLVQQVKA AASAAGVELA GENALERYDE AAFSQVVSTA 480 RGAGLAAFTY LRMNKALFDG DNWREFVSFV RAMADGGARP ALPRCDTGHS DLYVGFLDAA 540 KERKAPEAEG AATAVAL* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01373 | Glyco_hydro_14 | 9.0e-153 | 95 | 509 | 426 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
PLN02803 | PLN02803 | 0 | 85 | 539 | 458 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 90 | 516 | 436 | + beta-amylase; Provisional | ||
PLN02801 | PLN02801 | 0 | 92 | 513 | 433 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAF27255.2 | 0 | 1 | 538 | 1 | 506 | Os10g0565200 [Oryza sativa Japonica Group] |
EMBL | CAN62440.1 | 0 | 1 | 542 | 1 | 533 | hypothetical protein [Vitis vinifera] |
RefSeq | NP_001065418.1 | 0 | 1 | 538 | 1 | 528 | Os10g0565200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002282871.1 | 0 | 1 | 542 | 1 | 533 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002464915.1 | 0 | 1 | 547 | 1 | 547 | hypothetical protein SORBIDRAFT_01g028700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 92 | 513 | 12 | 441 | A Chain A, Characterization And Engineering Of The Bifunctional N- And O-glucosyltransferase Involved In Xenobiotic Metabolism In Plants |
PDB | 1q6c_A | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1ukp_D | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1ukp_C | 0 | 92 | 513 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
BU103692 | 457 | 88 | 544 | 0 |
HO794833 | 417 | 130 | 543 | 0 |
HO825836 | 382 | 166 | 544 | 0 |
HO781538 | 348 | 92 | 439 | 0 |
BU103692 | 25 | 1 | 25 | 0.0007 |
Sequence Alignments (This image is cropped. Click for full image.) |
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