y
Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si035044m |
Family | GH14 |
Protein Properties | Length: 544 Molecular Weight: 58892.4 Isoelectric Point: 7.5457 |
Chromosome | Chromosome/Scaffold: 9 Start: 17299082 End: 17301322 |
Description | beta-amylase 1 |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH14 | 85 | 502 | 0 |
FVMMPLDTVKKCGTALNRRKAVQASLAALKSAGVEGVMVDVWWGIAESDGPGRYNFAGYAELMEMARKTGLKVQAVMSFHQCGGNVGDSVNIPLPRWALE EMEKDQDLCYTDQWGRRNFEYVSLGCDAMPVLKGRTPVECYTDFMRAFRDHFADYLGNTIVEIQVGMGPAGELRYPSYPESNGTWRFPGIGAFQCNDRYM LSSLKAAAEAAGKPEWGHGGPTDAGSYNNWPEDTIFFRRENGGWSTEYGDFFLSWYSQMLMEHGDRILTGASSVFSASPVEVSVKVAGIHWHYGTRSHAP ELTAGYYNTRHHDGYLPVARLLARHGAVLNFTCVEMRDHEQPQDAQCMPEALVRQVGAAARAAGVGLAGENALPRYDGAAHDQVVSTAAERAAEDRMVAF TYLRMGADLFHPDNWHRF |
Full Sequence |
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Protein Sequence Length: 544 Download |
MAFNLAQSTA AAASVAPRTP RHAAAAPASV SVRKAGGAPP SSSGLRLQRQ ACCEPSVAPA 60 RPVACRAAAA AAERASRRRA GVPVFVMMPL DTVKKCGTAL NRRKAVQASL AALKSAGVEG 120 VMVDVWWGIA ESDGPGRYNF AGYAELMEMA RKTGLKVQAV MSFHQCGGNV GDSVNIPLPR 180 WALEEMEKDQ DLCYTDQWGR RNFEYVSLGC DAMPVLKGRT PVECYTDFMR AFRDHFADYL 240 GNTIVEIQVG MGPAGELRYP SYPESNGTWR FPGIGAFQCN DRYMLSSLKA AAEAAGKPEW 300 GHGGPTDAGS YNNWPEDTIF FRRENGGWST EYGDFFLSWY SQMLMEHGDR ILTGASSVFS 360 ASPVEVSVKV AGIHWHYGTR SHAPELTAGY YNTRHHDGYL PVARLLARHG AVLNFTCVEM 420 RDHEQPQDAQ CMPEALVRQV GAAARAAGVG LAGENALPRY DGAAHDQVVS TAAERAAEDR 480 MVAFTYLRMG ADLFHPDNWH RFAAFVRRMD GAGSCREAAE REARSVAQAT GSLVHEAAVA 540 LRS* 600 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02905 | PLN02905 | 1.0e-127 | 82 | 511 | 437 | + beta-amylase | ||
PLN02161 | PLN02161 | 1.0e-127 | 82 | 509 | 437 | + beta-amylase | ||
PLN02801 | PLN02801 | 1.0e-171 | 82 | 509 | 435 | + beta-amylase | ||
PLN00197 | PLN00197 | 0 | 81 | 541 | 468 | + beta-amylase; Provisional | ||
PLN02803 | PLN02803 | 0 | 81 | 513 | 433 | + beta-amylase |
Gene Ontology | |
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GO Term | Description |
GO:0000272 | polysaccharide catabolic process |
GO:0016161 | beta-amylase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EAY88485.1 | 0 | 45 | 541 | 45 | 554 | hypothetical protein OsI_09956 [Oryza sativa Indica Group] |
GenBank | EAZ16360.1 | 0 | 45 | 543 | 41 | 535 | hypothetical protein OsJ_31822 [Oryza sativa Japonica Group] |
RefSeq | NP_001048926.1 | 0 | 45 | 541 | 46 | 555 | Os03g0141200 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001147532.1 | 0 | 1 | 543 | 1 | 544 | beta-amylase [Zea mays] |
RefSeq | XP_002467119.1 | 0 | 1 | 543 | 1 | 547 | hypothetical protein SORBIDRAFT_01g019850 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1wdp_A | 0 | 82 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt71g1 Complexed With Udp-Glucose |
PDB | 1q6c_A | 0 | 82 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1bfn_A | 0 | 82 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
PDB | 1uko_D | 0 | 82 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
PDB | 1uko_C | 0 | 82 | 509 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO826564 | 402 | 139 | 537 | 0 |
HO779314 | 407 | 142 | 541 | 0 |
BU103692 | 434 | 81 | 514 | 0 |
EG518392 | 307 | 97 | 403 | 0 |
JG622609 | 289 | 139 | 427 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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