Basic Information | |
---|---|
Species | Setaria italica |
Cazyme ID | Si035153m |
Family | GT47 |
Protein Properties | Length: 526 Molecular Weight: 59929.3 Isoelectric Point: 8.6394 |
Chromosome | Chromosome/Scaffold: 9 Start: 4566338 End: 4568124 |
Description | Exostosin family protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GT47 | 90 | 438 | 0 |
CRGRYVYIHDLPPRFNADIIRNCRKTEDHWGDMCRFLMNAGLGRPLADRVDGVIRSEAGWYDTHQFALDAIFHNRMRQYECLTTDPAAASAVFVPFYAGF DFVRYHWGYDNATRDAASVDLTQWLMARPEWRRMGGCDHFLVAGRTGWDFRRSNNVDPDWGNDLLVMPAGRNMSVLVLESAMLHGSDYPVPYPTYFHPRS DADVLRWQDRVRNRRREWLMAFVGAPRPDVPINIRVRDHVIAQCKASSSCTMLGCARATGSTQCHTPGNIMRLFQKTVFCLQPPGDTCTRRSAFDSMVAG CIPVFFHPGSAYKQYRWHLPEDHHRYSVYIPDADVRQRNVSIEAVLRAI |
Full Sequence |
---|
Protein Sequence Length: 526 Download |
MERIGAHGGK RRWLPRLLLL AALSWLLLVY LHVAVFRAPP VISAPPHTSL VAVASDREDG 60 RRFLLRQEEQ LKKIASSSAR EERRGNPDTC RGRYVYIHDL PPRFNADIIR NCRKTEDHWG 120 DMCRFLMNAG LGRPLADRVD GVIRSEAGWY DTHQFALDAI FHNRMRQYEC LTTDPAAASA 180 VFVPFYAGFD FVRYHWGYDN ATRDAASVDL TQWLMARPEW RRMGGCDHFL VAGRTGWDFR 240 RSNNVDPDWG NDLLVMPAGR NMSVLVLESA MLHGSDYPVP YPTYFHPRSD ADVLRWQDRV 300 RNRRREWLMA FVGAPRPDVP INIRVRDHVI AQCKASSSCT MLGCARATGS TQCHTPGNIM 360 RLFQKTVFCL QPPGDTCTRR SAFDSMVAGC IPVFFHPGSA YKQYRWHLPE DHHRYSVYIP 420 DADVRQRNVS IEAVLRAIPP ATVERMREEV IRLIPRVLYA DPRSKLETLK DAVDIAVEGI 480 LDTVARIRKG EYVDSGGPVT EDPPNLFSST ESRFRPKQSA QDDDH* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00494 | SQS_PSY | 0.008 | 408 | 492 | 90 | + Squalene/phytoene synthase. | ||
pfam03016 | Exostosin | 7.0e-64 | 90 | 438 | 360 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17347.1 | 0 | 88 | 524 | 227 | 641 | Hypothetical protein [Oryza sativa Japonica Group] |
RefSeq | NP_001048943.1 | 0 | 88 | 524 | 83 | 497 | Os03g0144300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002465869.1 | 0 | 70 | 514 | 70 | 515 | hypothetical protein SORBIDRAFT_01g047310 [Sorghum bicolor] |
RefSeq | XP_002468519.1 | 0 | 17 | 523 | 15 | 485 | hypothetical protein SORBIDRAFT_01g047290 [Sorghum bicolor] |
RefSeq | XP_002468520.1 | 0 | 88 | 519 | 54 | 475 | hypothetical protein SORBIDRAFT_01g047300 [Sorghum bicolor] |