Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si035441m |
Family | PL1 |
Protein Properties | Length: 482 Molecular Weight: 51240.4 Isoelectric Point: 6.2854 |
Chromosome | Chromosome/Scaffold: 9 Start: 17803593 End: 17808226 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 138 | 338 | 0 |
WIVFAADMTIRLNEELLVNSYKTIDGRGARVHIGAGGACITLQYVSNIIIHNVHVHDCVPAGNANVRSSPTHYGWRTRSDGDGISLFGARDVWVDHCALW RCADGLVDAIEGSTAITVSNSYFAHHDEVMLLGASDAYLPDSGMQVTIAFNRFGPGLVQRMPRCRRGYFHIVNNDYTSWEMYAIGGSASPTINSQGNRYI A |
Full Sequence |
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Protein Sequence Length: 482 Download |
MAGAPKSTGI ALIPLLLLAA TASTLPLLNS SVPDPAAVVA DFHSKVATSR RRMQEAGGGA 60 SSGGCMTGNP IDDCWRCAGT DWRQDRQRLA DCGIGFGRNA LGGKGGPLYV VTDSSDRDPV 120 NPVPGTLRHA AIQEGPLWIV FAADMTIRLN EELLVNSYKT IDGRGARVHI GAGGACITLQ 180 YVSNIIIHNV HVHDCVPAGN ANVRSSPTHY GWRTRSDGDG ISLFGARDVW VDHCALWRCA 240 DGLVDAIEGS TAITVSNSYF AHHDEVMLLG ASDAYLPDSG MQVTIAFNRF GPGLVQRMPR 300 CRRGYFHIVN NDYTSWEMYA IGGSASPTIN SQGNRYIAPA DPNAKEVTKR VDTAEGQWSG 360 WNWRTEGDMM VNGAFFVPSG EGMEEIYEKA SSTDPKSSAL VDTLTQNAGV LGDPRNDAEE 420 TGYTGLNYAG VGNGRGGGGN GYGYLGMVYA NDADRGRRSR SMLSLTSSVV TLVALGCLRL 480 L* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3866 | PelB | 6.0e-27 | 102 | 334 | 251 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 1.0e-67 | 151 | 336 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 1.0e-75 | 144 | 339 | 207 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP54096.1 | 0 | 28 | 415 | 30 | 419 | pectate lyase 12 precursor, putative, expressed [Oryza sativa (japonica cultivar-group)] |
GenBank | ACN31780.1 | 0 | 1 | 414 | 1 | 417 | unknown [Zea mays] |
GenBank | EEC67092.1 | 0 | 28 | 481 | 30 | 491 | hypothetical protein OsI_33884 [Oryza sativa Indica Group] |
RefSeq | NP_001147972.1 | 0 | 1 | 481 | 1 | 483 | pectate lyase 12 [Zea mays] |
RefSeq | XP_002464529.1 | 0 | 1 | 481 | 1 | 482 | hypothetical protein SORBIDRAFT_01g020180 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 69 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 69 | 411 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 9e-17 | 101 | 337 | 22 | 247 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1bn8_A | 0.00000000000004 | 160 | 348 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |
PDB | 1vbl_A | 0.00000000000005 | 153 | 336 | 128 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |