Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si035588m |
Family | GT47 |
Protein Properties | Length: 462 Molecular Weight: 51627.9 Isoelectric Point: 8.6107 |
Chromosome | Chromosome/Scaffold: 9 Start: 47633031 End: 47635766 |
Description | exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 65 | 382 | 0 |
LRVYMYDLPPEFHFGLLDWKPPGFGGGVWPDVRGGGGVPEYPGGLNLQHSIEYWLTLDLLASEQGAPTPCAAVRVPRAADADVVFVPFFASLSFNRHSRV VPPARDSEDRALQRRLLEFLAARPEWRRAGGRDHVVLAHHPNGMLDARYRLWPCVFVLCDFGRYPRSVANLDKDVIAPYRHVVANFANDTAGYDDRPTLL YFQGAIYRKDGGSIRQELYYLLKDEKDVHFSFGSVAGNGIEQATQGMRASRFCLNIAGDTPSSNRLFDSIVSHCVPVIISDEIELPFEDVLDYSKFSVIV RGTDAVKKGFLMNLITGI |
Full Sequence |
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Protein Sequence Length: 462 Download |
MAAAAASCRS PLAWLFALAA ALFFASWYLL LDSAAGLPAA ARPYLGGGGR RPGPARKCDP 60 TGALLRVYMY DLPPEFHFGL LDWKPPGFGG GVWPDVRGGG GVPEYPGGLN LQHSIEYWLT 120 LDLLASEQGA PTPCAAVRVP RAADADVVFV PFFASLSFNR HSRVVPPARD SEDRALQRRL 180 LEFLAARPEW RRAGGRDHVV LAHHPNGMLD ARYRLWPCVF VLCDFGRYPR SVANLDKDVI 240 APYRHVVANF ANDTAGYDDR PTLLYFQGAI YRKDGGSIRQ ELYYLLKDEK DVHFSFGSVA 300 GNGIEQATQG MRASRFCLNI AGDTPSSNRL FDSIVSHCVP VIISDEIELP FEDVLDYSKF 360 SVIVRGTDAV KKGFLMNLIT GISREEWTRM WNRLKEVEKH FEYQYPSQTD DAVQMIWKTI 420 ARKVPSIRLK INRLRRFSRF ETNKTDEGPS HSSSWLQNQA P* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 4.0e-46 | 65 | 371 | 317 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACF84601.1 | 0 | 57 | 461 | 60 | 462 | unknown [Zea mays] |
RefSeq | NP_001049980.1 | 0 | 33 | 459 | 38 | 466 | Os03g0324700 [Oryza sativa (japonica cultivar-group)] |
RefSeq | NP_001131151.1 | 0 | 69 | 461 | 1 | 391 | hypothetical protein LOC100192459 [Zea mays] |
RefSeq | NP_001136572.1 | 0 | 34 | 460 | 31 | 452 | hypothetical protein LOC100216694 [Zea mays] |
RefSeq | XP_002467934.1 | 0 | 45 | 461 | 52 | 462 | hypothetical protein SORBIDRAFT_01g036720 [Sorghum bicolor] |