| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si035616m |
| Family | GH28 |
| Protein Properties | Length: 457 Molecular Weight: 49153.9 Isoelectric Point: 6.1828 |
| Chromosome | Chromosome/Scaffold: 9 Start: 57446723 End: 57450387 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 69 | 417 | 0 |
| RDGGAALVVPPGKWLTGPFNLTSHFTLYLDEGAEILASQDMKDWPLIAPLPSYGRGRDEPGPRYSNFIAGSNLTDVIITGKNGTINGQGQVWWDKYHAKE LQFTRGYLLELLYSNNIIISNVTFVDSPSWNLHPTYCTNVTISGVTILAPVHSPNTDGIDPDSSSHVKIEDCYIVSGDDCIAVKSGWDEYGIKFNMPSQH IIIRRLTCISPTSAMIALGSEMSGGIRDVRAEDNIAINTESAVRVKSGVGRGGFVKDIFVRGLSLHTMKWVFWMTGNYGQHPDNSSDPNAMPEVTGINYS DVFAENVTMAGRMEGIPNDPYTGICISNVTARLAPDAKKLQWNCTDVKG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 457 Download |
| MATRRIPRPA AVAVALCAAA LLAACAGASA AGCRKHVAKV TEYGAVGDGK RLNTAAFAKA 60 VADLSERARD GGAALVVPPG KWLTGPFNLT SHFTLYLDEG AEILASQDMK DWPLIAPLPS 120 YGRGRDEPGP RYSNFIAGSN LTDVIITGKN GTINGQGQVW WDKYHAKELQ FTRGYLLELL 180 YSNNIIISNV TFVDSPSWNL HPTYCTNVTI SGVTILAPVH SPNTDGIDPD SSSHVKIEDC 240 YIVSGDDCIA VKSGWDEYGI KFNMPSQHII IRRLTCISPT SAMIALGSEM SGGIRDVRAE 300 DNIAINTESA VRVKSGVGRG GFVKDIFVRG LSLHTMKWVF WMTGNYGQHP DNSSDPNAMP 360 EVTGINYSDV FAENVTMAGR MEGIPNDPYT GICISNVTAR LAPDAKKLQW NCTDVKGVTY 420 DVTPKPCPEL GAEGKPCAFP EEELIIGPHE LPKCTY* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 7.0e-22 | 35 | 326 | 311 | + Probable polygalacturonase | ||
| PLN03010 | PLN03010 | 8.0e-23 | 40 | 333 | 309 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 1.0e-28 | 40 | 455 | 428 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-30 | 134 | 326 | 198 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 1.0e-59 | 37 | 340 | 328 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001048813.1 | 0 | 10 | 456 | 12 | 458 | Os03g0124900 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001151102.1 | 0 | 1 | 456 | 1 | 463 | glycoside hydrolase, family 28 [Zea mays] |
| RefSeq | XP_002303605.1 | 0 | 8 | 455 | 8 | 465 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002468601.1 | 0 | 27 | 456 | 33 | 463 | hypothetical protein SORBIDRAFT_01g048880 [Sorghum bicolor] |
| RefSeq | XP_002509850.1 | 0 | 24 | 455 | 39 | 474 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 1.99993e-41 | 40 | 421 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 1.99993e-41 | 40 | 421 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 1.99993e-41 | 40 | 421 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 1.99993e-41 | 40 | 421 | 30 | 432 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 0.00000000000001 | 70 | 326 | 37 | 294 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
