Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si038531m |
Family | GT47 |
Protein Properties | Length: 464 Molecular Weight: 51171.3 Isoelectric Point: 8.5797 |
Chromosome | Chromosome/Scaffold: 9 Start: 17561422 End: 17562813 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 63 | 403 | 0 |
GGRYVYVHDLPPRFNADILRGCAAANDRWADMCEDMGNAGLGRPLSGGALTGATGWYATHQFALDAIFHGRMRQYGCITNDSSAAAAVFVPFYAGFEFAR HVWGYDNAARDAAALDLVRWLVRRPEWGRAGGRDHFLVAGRTGWDFRRDAYPNATWGTNLFLLPAVKNMTFLVVETATMGWGNDLAVPYPTYFHPRTDSD VVSWQHRIRSADRWWLMSFVGAARPDDPKSIRSQVMDQCRASPACRQLGCTSGTAQCHYPGDIMVLFQSSTFCLQPPGDSASRRSTFDAMVAGCIPVFFQ PRSAYLQYRWHLPKDHATYSVFIPAESVRSGNVSVEAELRK |
Full Sequence |
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Protein Sequence Length: 464 Download |
MNKSSAVSRP CFFLVAAAAL WVLTLYLRLL ALMSVPGAFT GRAASPPVPV DGNGSGAGGD 60 PCGGRYVYVH DLPPRFNADI LRGCAAANDR WADMCEDMGN AGLGRPLSGG ALTGATGWYA 120 THQFALDAIF HGRMRQYGCI TNDSSAAAAV FVPFYAGFEF ARHVWGYDNA ARDAAALDLV 180 RWLVRRPEWG RAGGRDHFLV AGRTGWDFRR DAYPNATWGT NLFLLPAVKN MTFLVVETAT 240 MGWGNDLAVP YPTYFHPRTD SDVVSWQHRI RSADRWWLMS FVGAARPDDP KSIRSQVMDQ 300 CRASPACRQL GCTSGTAQCH YPGDIMVLFQ SSTFCLQPPG DSASRRSTFD AMVAGCIPVF 360 FQPRSAYLQY RWHLPKDHAT YSVFIPAESV RSGNVSVEAE LRKIPPAAIE KMREEVIKLV 420 PRLVYADPRY KLDTVKDAYD VAMDGVLERV AEPAKRQIGS YWR* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 8.0e-60 | 61 | 404 | 358 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAO17347.1 | 0 | 60 | 451 | 227 | 620 | Hypothetical protein [Oryza sativa Japonica Group] |
GenBank | EEE58313.1 | 0 | 60 | 451 | 261 | 654 | hypothetical protein OsJ_09380 [Oryza sativa Japonica Group] |
RefSeq | NP_001048943.1 | 0 | 59 | 451 | 82 | 476 | Os03g0144300 [Oryza sativa (japonica cultivar-group)] |
RefSeq | XP_002464522.1 | 0 | 1 | 463 | 2 | 459 | hypothetical protein SORBIDRAFT_01g020060 [Sorghum bicolor] |
RefSeq | XP_002468519.1 | 0 | 1 | 451 | 1 | 447 | hypothetical protein SORBIDRAFT_01g047290 [Sorghum bicolor] |