| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si038685m |
| Family | GH28 |
| Protein Properties | Length: 397 Molecular Weight: 43146.8 Isoelectric Point: 6.6277 |
| Chromosome | Chromosome/Scaffold: 9 Start: 52810781 End: 52813518 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 48 | 376 | 0 |
| EACNSTDYRSMFLVPEGKTYLLMPVTFRGPCRAISITAMIKGTLEAPSNRSVWLDRNLQEWITFEGIDRLHVLGGGTLNGNGQQWWINSCKLNKPMRCIK GPTALYFRRCTHLVVEDLQVRDSMQMHVAISYSWNVLVSKLFITAPGWSPNTDGIHVSNSKEVSISDCTISTGDDCVSIVSGSMFVRVTGIFCGPGHGIS IGSLGASNSWAHVSDVLVEKATLQGTTNGVRIKTWQGGHGFAERITFQDVSMHNVTNPVIIDQNYCDPRKPCHEQGSGVAVRNIHYRNISGTSASKVAIS FICSEAVHCDGIVMQDINLVGEGRHTACS | |||
| Full Sequence |
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| Protein Sequence Length: 397 Download |
| ADGPTAESSD ELRLRSGPPP RVVDVDDYGA GSNGGCDDTE AFLAAWREAC NSTDYRSMFL 60 VPEGKTYLLM PVTFRGPCRA ISITAMIKGT LEAPSNRSVW LDRNLQEWIT FEGIDRLHVL 120 GGGTLNGNGQ QWWINSCKLN KPMRCIKGPT ALYFRRCTHL VVEDLQVRDS MQMHVAISYS 180 WNVLVSKLFI TAPGWSPNTD GIHVSNSKEV SISDCTISTG DDCVSIVSGS MFVRVTGIFC 240 GPGHGISIGS LGASNSWAHV SDVLVEKATL QGTTNGVRIK TWQGGHGFAE RITFQDVSMH 300 NVTNPVIIDQ NYCDPRKPCH EQGSGVAVRN IHYRNISGTS ASKVAISFIC SEAVHCDGIV 360 MQDINLVGEG RHTACSYRNA TVAQLGYIFP FCSVEM* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02188 | PLN02188 | 4.0e-88 | 23 | 390 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN03010 | PLN03010 | 3.0e-90 | 24 | 377 | 357 | + polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 4.0e-95 | 57 | 382 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 4.0e-119 | 8 | 393 | 388 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 1.0e-125 | 9 | 366 | 358 | + Probable polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACL53778.1 | 0 | 1 | 396 | 35 | 437 | unknown [Zea mays] |
| GenBank | EAZ26072.1 | 0 | 1 | 396 | 41 | 411 | hypothetical protein OsJ_09925 [Oryza sativa Japonica Group] |
| RefSeq | NP_001049387.1 | 0 | 1 | 396 | 41 | 438 | Os03g0216800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | NP_001150245.1 | 0 | 1 | 396 | 35 | 437 | polygalacturonase [Zea mays] |
| RefSeq | XP_002468269.1 | 0 | 1 | 396 | 3 | 398 | hypothetical protein SORBIDRAFT_01g042735 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1hg8_A | 2e-19 | 59 | 377 | 26 | 342 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 1nhc_F | 2e-17 | 106 | 375 | 56 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-17 | 106 | 375 | 56 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-17 | 106 | 375 | 56 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-17 | 106 | 375 | 56 | 327 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| BQ840584 | 223 | 41 | 262 | 0 |
| EE041953 | 231 | 1 | 228 | 0 |
| EE091344 | 232 | 135 | 366 | 0 |
| EE012525 | 208 | 1 | 205 | 0 |
| EH756941 | 253 | 141 | 392 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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