| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si038799m |
| Family | GH28 |
| Protein Properties | Length: 379 Molecular Weight: 40554.1 Isoelectric Point: 9.2086 |
| Chromosome | Chromosome/Scaffold: 9 Start: 2488136 End: 2489494 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 27 | 362 | 0 |
| WKAACASPRPAVVLVPGGKRYLLKLVRLAGPCKSSVVLTVKGTLVASPNRADWSDRDRRHWIVFSAVDKLTVNGGGAVDGNGETWWKHSCKINKAMPCKE APTALSFHYCTGLRVQDLKIVNSQQIHMSIEDCTNVQLAGLSITASGTSPNTDGIHITRSKDVQVTNCKIKTGDDCMSIENGTHNLYVSKVVCGPGHGIS IGSLGDDNSRAEVSGITIDTVQLYGTTNGARIKTYQGGSGYAKDITFQNMIMDNVKNPIIIDQNYCDKAKPCKAQGSAVEVSNVVFKNIRGTTVTKDAIK LNCSKNVPCHGITLQNIDLKMEGGDGAAESTCQNAK | |||
| Full Sequence |
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| Protein Sequence Length: 379 Download |
| GGVFSLDRYG ARGDGRHDDT RALAKAWKAA CASPRPAVVL VPGGKRYLLK LVRLAGPCKS 60 SVVLTVKGTL VASPNRADWS DRDRRHWIVF SAVDKLTVNG GGAVDGNGET WWKHSCKINK 120 AMPCKEAPTA LSFHYCTGLR VQDLKIVNSQ QIHMSIEDCT NVQLAGLSIT ASGTSPNTDG 180 IHITRSKDVQ VTNCKIKTGD DCMSIENGTH NLYVSKVVCG PGHGISIGSL GDDNSRAEVS 240 GITIDTVQLY GTTNGARIKT YQGGSGYAKD ITFQNMIMDN VKNPIIIDQN YCDKAKPCKA 300 QGSAVEVSNV VFKNIRGTTV TKDAIKLNCS KNVPCHGITL QNIDLKMEGG DGAAESTCQN 360 AKWRKSGTVR PQPCTSKN* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-88 | 1 | 378 | 380 | + polygalacturonase | ||
| PLN02188 | PLN02188 | 5.0e-100 | 4 | 375 | 375 | + polygalacturonase/glycoside hydrolase family protein | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-109 | 33 | 362 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 3.0e-133 | 3 | 378 | 376 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 5.0e-138 | 5 | 372 | 370 | + polygalacturonase ADPG | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_001140231.1 | 0 | 3 | 377 | 63 | 441 | hypothetical protein LOC100272271 [Zea mays] |
| RefSeq | NP_001142092.1 | 0 | 3 | 376 | 92 | 478 | hypothetical protein LOC100274254 [Zea mays] |
| RefSeq | XP_002463688.1 | 0 | 3 | 374 | 61 | 432 | hypothetical protein SORBIDRAFT_01g004230 [Sorghum bicolor] |
| RefSeq | XP_002466241.1 | 0 | 3 | 377 | 60 | 434 | hypothetical protein SORBIDRAFT_01g004190 [Sorghum bicolor] |
| RefSeq | XP_002466242.1 | 0 | 3 | 378 | 74 | 452 | hypothetical protein SORBIDRAFT_01g004220 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-22 | 98 | 345 | 113 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1rmg_A | 2e-20 | 9 | 350 | 26 | 343 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
| PDB | 1hg8_A | 5e-19 | 41 | 318 | 28 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 6e-18 | 22 | 318 | 9 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| PDB | 2iq7_F | 6e-18 | 22 | 318 | 9 | 292 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| CA139845 | 231 | 119 | 349 | 0 |
| FL930633 | 195 | 185 | 379 | 0 |
| FL930634 | 192 | 188 | 379 | 0 |
| BJ255300 | 205 | 176 | 379 | 0 |
| DV514791 | 206 | 3 | 208 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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