Basic Information | |
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Species | Setaria italica |
Cazyme ID | Si039123m |
Family | GT47 |
Protein Properties | Length: 517 Molecular Weight: 57331.4 Isoelectric Point: 8.0386 |
Chromosome | Chromosome/Scaffold: 9 Start: 17599958 End: 17601508 |
Description | Exostosin family protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 110 | 460 | 0 |
CAGRYIYMYDLPPRFNADLVRGCRNLSPWMDMCPYLANCGMGPALGDEGGVFQARGWYATDQFTLEIISHCRMKRYGCLTGDPSLASAVYVPFYAAMDAG RYFFNATSTRDALALDLAEWLVRRPEWCAMGGRDHFMVAGRTSWELERKADVDEEWGTKLLTLPAIRNMTALILETSPWDRDNFGTSEARTWSSLAIPYP TYFHPEAAADVAAWQEKVRRAERPWHFSFAGAPRPGSKKTIRAEIIRQCGASSRCNLFDCGSGASCYWPGGATRVFESSEFCLQPRGDTLTRRSTFDAIL AGCIPVFFHPGSAYTQYKLHFPSDPNSWSVLIMHTDVTGRNVSIEETLSRI |
Full Sequence |
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Protein Sequence Length: 517 Download |
MNPTPVAENF QNKAMDAVDK PDAGSGAVIR SPRMCHLVIL STAFWALVLY SCMQGSDGGV 60 ASVLFKPAAF SLPKLSSVVP VDRRPPSEQP PASVAPAVNR SVTAPADDRC AGRYIYMYDL 120 PPRFNADLVR GCRNLSPWMD MCPYLANCGM GPALGDEGGV FQARGWYATD QFTLEIISHC 180 RMKRYGCLTG DPSLASAVYV PFYAAMDAGR YFFNATSTRD ALALDLAEWL VRRPEWCAMG 240 GRDHFMVAGR TSWELERKAD VDEEWGTKLL TLPAIRNMTA LILETSPWDR DNFGTSEART 300 WSSLAIPYPT YFHPEAAADV AAWQEKVRRA ERPWHFSFAG APRPGSKKTI RAEIIRQCGA 360 SSRCNLFDCG SGASCYWPGG ATRVFESSEF CLQPRGDTLT RRSTFDAILA GCIPVFFHPG 420 SAYTQYKLHF PSDPNSWSVL IMHTDVTGRN VSIEETLSRI SPEAVRAMRE EVIRLIPRVV 480 YADPRSTRLD FKDAFDIALD AVIDRVAKRR RGAVVGR |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-62 | 109 | 460 | 360 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK54285.1 | 0 | 108 | 500 | 64 | 450 | AC034258_3 hypothetical protein [Oryza sativa Japonica Group] |
DDBJ | BAH94918.1 | 0 | 108 | 500 | 95 | 481 | Os10g0459300 [Oryza sativa Japonica Group] |
RefSeq | NP_001150032.1 | 0 | 108 | 517 | 56 | 460 | xyloglucan galactosyltransferase KATAMARI 1 [Zea mays] |
RefSeq | XP_002464524.1 | 0 | 1 | 517 | 1 | 489 | hypothetical protein SORBIDRAFT_01g020080 [Sorghum bicolor] |
RefSeq | XP_002468517.1 | 0 | 108 | 517 | 137 | 537 | hypothetical protein SORBIDRAFT_01g047270 [Sorghum bicolor] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG636298 | 275 | 181 | 453 | 0 |
EL456596 | 281 | 155 | 433 | 0 |
EE075461 | 262 | 217 | 477 | 0 |
CF668912 | 283 | 223 | 504 | 0 |
FL739554 | 263 | 217 | 478 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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