| Basic Information | |
|---|---|
| Species | Setaria italica |
| Cazyme ID | Si039549m |
| Family | GH10 |
| Protein Properties | Length: 590 Molecular Weight: 65314.5 Isoelectric Point: 6.4685 |
| Chromosome | Chromosome/Scaffold: 9 Start: 53594081 End: 53596937 |
| Description | Glycosyl hydrolase family 10 protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| GH10 | 247 | 507 | 0 |
| KGFPLGNAMTKEILDIPEYEEWFTRRFKWATMENEMKWYSTEYHEGHEEYEVADRMLALAEKHNISVRGHNVFWDDQSHQMDWVSKLGEGKLKAAVAKRL KSVVSRYAGKVIHWDVVNENLHFRFFEDKLGKDASGEIFNEVAKLDGKPILFMNEYNTIEQPGDMAPLPTKYLAKLRQIQAYPGNKGLKYGIGLESHFDK PNIPYMRGSLDTLAAADVPVWLTEVDVTKGPKQVEYLEEVMREGFGHPGVRGIVMWGAWHA | |||
| Full Sequence |
|---|
| Protein Sequence Length: 590 Download |
| MISTGKLILI LLIVLFEGFL VTSAGGYSSE KSSGKSGGYA SEQTSEKADG YSSKKSSVKV 60 PYDYSANIEA TVSSAPMSGC IKEPEKPLYG GGIISDASYP SSAGGKKLPC PTKGSVLKVD 120 LKKDHHYALS AWLKLSKGTG DITAVIVTPD GKFVTAGAIA AQSGCWTLLK GGATSYSEGK 180 GDLFFESNST AEIMAESIAL QGFSFDEWNA HREEVIAKDR KNKVKIMVES EGKPLPDAEL 240 SLEWVAKGFP LGNAMTKEIL DIPEYEEWFT RRFKWATMEN EMKWYSTEYH EGHEEYEVAD 300 RMLALAEKHN ISVRGHNVFW DDQSHQMDWV SKLGEGKLKA AVAKRLKSVV SRYAGKVIHW 360 DVVNENLHFR FFEDKLGKDA SGEIFNEVAK LDGKPILFMN EYNTIEQPGD MAPLPTKYLA 420 KLRQIQAYPG NKGLKYGIGL ESHFDKPNIP YMRGSLDTLA AADVPVWLTE VDVTKGPKQV 480 EYLEEVMREG FGHPGVRGIV MWGAWHAKGC YVMCLTDNKF KNLPVGDVVD KLLDEWRKVP 540 EKPRTDDKGV FEAELFHGEY KVTVKHKSLP EPIVQTVDLD SKSTAKITC* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| COG3693 | XynA | 3.0e-29 | 252 | 503 | 275 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
| pfam00331 | Glyco_hydro_10 | 7.0e-47 | 241 | 503 | 285 | + Glycosyl hydrolase family 10. | ||
| smart00633 | Glyco_10 | 1.0e-72 | 282 | 529 | 272 | + Glycosyl hydrolase family 10. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABF94508.1 | 0 | 2 | 587 | 3 | 550 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | ABF94509.1 | 0 | 72 | 587 | 2 | 523 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
| GenBank | EEC74704.1 | 0 | 2 | 587 | 3 | 550 | hypothetical protein OsI_10420 [Oryza sativa Indica Group] |
| RefSeq | NP_001049300.1 | 0 | 2 | 587 | 3 | 550 | Os03g0201800 [Oryza sativa (japonica cultivar-group)] |
| RefSeq | XP_002465686.1 | 0 | 1 | 587 | 1 | 570 | hypothetical protein SORBIDRAFT_01g043730 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1ta3_B | 5e-22 | 238 | 503 | 3 | 269 | B Chain B, Crystal Structure Of Xylanase (Gh10) In Complex With Inhibitor (Xip) |
| PDB | 1nq6_A | 1e-21 | 251 | 529 | 15 | 298 | A Chain A, Crystal Structure Of The Catalytic Domain Of Xylanase A From Streptomyces Halstedii Jm8 |
| PDB | 1xyz_B | 5e-20 | 246 | 503 | 34 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1xyz_A | 5e-20 | 246 | 503 | 34 | 306 | A Chain A, A Common Protein Fold And Similar Active Site In Two Distinct Families Of Beta-Glycanases |
| PDB | 1tux_A | 2e-18 | 273 | 533 | 40 | 301 | A Chain A, High Resolution Crystal Structure Of A Thermostable Xylanase From Thermoascus Aurantiacus |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| (1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
