| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10000145m |
| Family | GH28 |
| Protein Properties | Length: 492 Molecular Weight: 53426.5 Isoelectric Point: 8.7382 |
| Chromosome | Chromosome/Scaffold: 15 Start: 2325330 End: 2327909 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 102 | 449 | 0 |
| DGGVQLIVPPGKWLTGSFNLTSHFTLFIQKGATILASQDESEYPVVAPLPSYGQGRDAAGPTFASLISGTNLTDVVITGNNGTINGQGKYWWVKYRSGGF KSITRPYTIEIMFSQNVQISNITIIDSPAWNIHPVYCSNVIVKGVTILAPIDSPNTDGINPDSCTNTLIEDCYVVSGDDCIAVKSGWDQFGIKVAMPTQQ LSIRRLTCISPDSAGIALGSEMSGGIKDVRIEDITLLQTQSAIRIKTAVGRGGYVKDIFARRFTMKTMKYVFWMSGAYNQHPVSGYDPKAMPEITNINYR DMTADNVTQPARLDGLKNDPFTKICMSNINIALAAEPKKLLWNCTDIS | |||
| Full Sequence |
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| Protein Sequence Length: 492 Download |
| MKNQSQIQNN KSNQMEFSLK PSTLKMVRTS FCILVVLAIS SFQMMESRDL SSKGHEKIQY 60 TALNCRKHTA VLTEFGAVGD GKTSNTKAFK EAITKLAPKA ADGGVQLIVP PGKWLTGSFN 120 LTSHFTLFIQ KGATILASQD ESEYPVVAPL PSYGQGRDAA GPTFASLISG TNLTDVVITG 180 NNGTINGQGK YWWVKYRSGG FKSITRPYTI EIMFSQNVQI SNITIIDSPA WNIHPVYCSN 240 VIVKGVTILA PIDSPNTDGI NPDSCTNTLI EDCYVVSGDD CIAVKSGWDQ FGIKVAMPTQ 300 QLSIRRLTCI SPDSAGIALG SEMSGGIKDV RIEDITLLQT QSAIRIKTAV GRGGYVKDIF 360 ARRFTMKTMK YVFWMSGAYN QHPVSGYDPK AMPEITNINY RDMTADNVTQ PARLDGLKND 420 PFTKICMSNI NIALAAEPKK LLWNCTDISG VSSKVTPKPC SLLPEKGAPV DCAFPVDKIP 480 IESVVLNKCS A* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN03010 | PLN03010 | 2.0e-18 | 74 | 453 | 406 | + polygalacturonase | ||
| PLN03003 | PLN03003 | 8.0e-23 | 72 | 380 | 320 | + Probable polygalacturonase At3g15720 | ||
| PLN02218 | PLN02218 | 7.0e-25 | 69 | 432 | 375 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-25 | 105 | 432 | 335 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 2.0e-52 | 45 | 367 | 348 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC63679.1 | 0 | 26 | 491 | 1 | 466 | putative polygalacturonase [Arabidopsis thaliana] |
| GenBank | ABK28510.1 | 0 | 15 | 491 | 1 | 477 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_179968.2 | 0 | 15 | 491 | 1 | 477 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_190464.1 | 0 | 26 | 489 | 1 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002513653.1 | 0 | 33 | 491 | 16 | 471 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 56 | 429 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 56 | 429 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 56 | 429 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 56 | 429 | 8 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 3e-16 | 114 | 406 | 52 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EG500458 | 280 | 69 | 348 | 0 |
| ES270592 | 257 | 188 | 444 | 0 |
| ES270401 | 272 | 173 | 444 | 0 |
| ES270768 | 251 | 194 | 444 | 0 |
| GR454113 | 283 | 15 | 295 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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