Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10000935m |
Family | CE8 |
Protein Properties | Length: 362 Molecular Weight: 40262.4 Isoelectric Point: 9.1284 |
Chromosome | Chromosome/Scaffold: 20 Start: 2388919 End: 2390737 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 60 | 351 | 0 |
ITVSLTGHSQFRSVQDAVDSIPKNNNMSIVIKIGPGFYREKVVVPATKPYITFKGAGRDLTVIEWHDRASDRGPDGQQLRTYQTASVTVFANHFSARNIS FTNTAPAPMPGMQGWQAVAFRISGDKAYFSGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIASRFGSIAAHGRTCPEEKTGFT FVGCRVTGTGPLYVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWARALDYESAHPFMAKSFVN |
Full Sequence |
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Protein Sequence Length: 362 Download |
MAQLRSFTYS LNFLLSVSFL FFHSLCFRFS FVAACSNSTE EIQHHHHHRK WVGPKGHKVI 60 TVSLTGHSQF RSVQDAVDSI PKNNNMSIVI KIGPGFYREK VVVPATKPYI TFKGAGRDLT 120 VIEWHDRASD RGPDGQQLRT YQTASVTVFA NHFSARNISF TNTAPAPMPG MQGWQAVAFR 180 ISGDKAYFSG CGFYGAQDTL CDDAGRHYFK ECYIEGSIDF IFGNGRSMYK DCELHSIASR 240 FGSIAAHGRT CPEEKTGFTF VGCRVTGTGP LYVGRAMGQY SRIVYAYTYF DALVAHGGWD 300 DWDHKSNKSK TAFFGVYNCY GPGAAATRGV SWARALDYES AHPFMAKSFV NGRHWIAPRD 360 A* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 1.0e-102 | 58 | 358 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 3.0e-104 | 29 | 361 | 363 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-111 | 56 | 356 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 2.0e-131 | 50 | 358 | 323 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 28 | 361 | 335 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD64977.1 | 0 | 1 | 361 | 1 | 360 | pectinesterase family protein [Brassica oleracea] |
GenBank | ABD65006.1 | 0 | 22 | 361 | 7 | 344 | pectinesterase family protein [Brassica oleracea] |
DDBJ | BAB09076.1 | 0 | 1 | 361 | 1 | 359 | pectin methylesterase-like [Arabidopsis thaliana] |
RefSeq | NP_199561.1 | 0 | 1 | 361 | 1 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002303355.1 | 0 | 47 | 358 | 3 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 5.99756e-43 | 52 | 356 | 5 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-33 | 62 | 356 | 7 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 2e-20 | 57 | 338 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-20 | 57 | 338 | 5 | 328 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 3uw0_A | 2e-20 | 57 | 329 | 32 | 340 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |