| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10001153m |
| Family | GH28 |
| Protein Properties | Length: 439 Molecular Weight: 47736.8 Isoelectric Point: 6.5908 |
| Chromosome | Chromosome/Scaffold: 20 Start: 594833 End: 598428 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 50 | 364 | 0 |
| CGNGGNNKTLLIPSDNTFLLQPIVFQGPCKSPSVQVQFNGNIVAPKSKAEWSDYKNLSWVGFKDIIGLTVTGSGTINGRGSSFWKQLHFRKCNNLHINGI TSVNSPKNHISINQCKNVEISNIRLIAPDESPNTDGINLSISSDVNIFDTVIETGDDCVALNNGSVNINITRMTCGPGHGISVGSLGRDGEESMVENVQV TDCTFNRSDNGARIKTWPNGKGYARNIVFKGINLIETKNPIIIDQNYVDKGRLDVEESAVAISNITFADIHGTSKRDEIVKIDCSKVTYCKDIVLEQIDI STVDGNKPVVECINY | |||
| Full Sequence |
|---|
| Protein Sequence Length: 439 Download |
| EIILRALFVL ILIHFGLVNG QIFDVLKYGA KGDGTTDDSK AFVDAWKAVC GNGGNNKTLL 60 IPSDNTFLLQ PIVFQGPCKS PSVQVQFNGN IVAPKSKAEW SDYKNLSWVG FKDIIGLTVT 120 GSGTINGRGS SFWKQLHFRK CNNLHINGIT SVNSPKNHIS INQCKNVEIS NIRLIAPDES 180 PNTDGINLSI SSDVNIFDTV IETGDDCVAL NNGSVNINIT RMTCGPGHGI SVGSLGRDGE 240 ESMVENVQVT DCTFNRSDNG ARIKTWPNGK GYARNIVFKG INLIETKNPI IIDQNYVDKG 300 RLDVEESAVA ISNITFADIH GTSKRDEIVK IDCSKVTYCK DIVLEQIDIS TVDGNKPVVE 360 CINYSIFLNL VKMISRNTYT CSLTTTSTTQ HTGSNNDSGG SRPKHIARSK NDFKNDKEIS 420 GLTLGEGSPE FHITLSDQ* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 6.0e-84 | 25 | 349 | 344 | + polygalacturonase ADPG | ||
| PLN02188 | PLN02188 | 1.0e-87 | 14 | 356 | 365 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02793 | PLN02793 | 1.0e-93 | 21 | 354 | 351 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 9.0e-108 | 12 | 363 | 372 | + Probable polygalacturonase At3g15720 | ||
| PLN03010 | PLN03010 | 7.0e-162 | 1 | 363 | 364 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAC79138.1 | 0 | 1 | 363 | 2 | 364 | putative polygalacturonase [Arabidopsis thaliana] |
| EMBL | CAA20037.1 | 0 | 12 | 361 | 3 | 351 | putative polygalacturonase [Arabidopsis thaliana] |
| RefSeq | NP_195292.2 | 0 | 1 | 361 | 2 | 371 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199296.1 | 0 | 49 | 363 | 1 | 315 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_199297.1 | 0 | 1 | 363 | 2 | 364 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 2e-20 | 110 | 363 | 66 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 2e-20 | 110 | 363 | 66 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 2e-20 | 110 | 363 | 66 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 2e-20 | 110 | 363 | 66 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 2e-20 | 110 | 363 | 66 | 329 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
