Basic Information | |
---|---|
Species | Thellungiella halophila |
Cazyme ID | Thhalv10001187m |
Family | GH28 |
Protein Properties | Length: 308 Molecular Weight: 33139.5 Isoelectric Point: 5.1179 |
Chromosome | Chromosome/Scaffold: 20 Start: 588159 End: 591199 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
---|
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH28 | 53 | 303 | 0 |
DEGDTKTLLIPSGQTFLLQPLQFRGPCGSSSVIQVPFLSVNGLSIIGTGTINGFGSSFWEEKISKRPTVLQFHNCNTLNISGITSIDSPRNHISINNCDK VMISNIQLIAPETSPNTDGIDIAASTNIQISNSVISTGDDCIALKTGSVNINITEVVCGPGHGISIGSLGDKGQEAKVENVQVTHCTFNKTTNGARIKTW KGGEGYVKHVYFEHITIIDGKNPIIIDQQYKDKGHRVLESEENSADVAISN |
Full Sequence |
---|
Protein Sequence Length: 308 Download |
MEIILRVVFF VNFLYFGFVS GIDYSVLDFG ATGDGETDDS KAFVKAWKTM CGDEGDTKTL 60 LIPSGQTFLL QPLQFRGPCG SSSVIQVPFL SVNGLSIIGT GTINGFGSSF WEEKISKRPT 120 VLQFHNCNTL NISGITSIDS PRNHISINNC DKVMISNIQL IAPETSPNTD GIDIAASTNI 180 QISNSVISTG DDCIALKTGS VNINITEVVC GPGHGISIGS LGDKGQEAKV ENVQVTHCTF 240 NKTTNGARIK TWKGGEGYVK HVYFEHITII DGKNPIIIDQ QYKDKGHRVL ESEENSADVA 300 ISNAQIL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 6.0e-72 | 1 | 282 | 318 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 6.0e-76 | 25 | 299 | 305 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 7.0e-78 | 26 | 284 | 289 | + Probable polygalacturonase | ||
PLN03003 | PLN03003 | 4.0e-93 | 4 | 282 | 303 | + Probable polygalacturonase At3g15720 | ||
PLN03010 | PLN03010 | 2.0e-130 | 1 | 305 | 328 | + polygalacturonase |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAC79138.1 | 0 | 1 | 304 | 1 | 315 | putative polygalacturonase [Arabidopsis thaliana] |
EMBL | CAA20037.1 | 0 | 11 | 307 | 1 | 307 | putative polygalacturonase [Arabidopsis thaliana] |
RefSeq | NP_195292.2 | 0 | 1 | 307 | 1 | 327 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_198105.2 | 0 | 2 | 307 | 31 | 348 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | NP_199297.1 | 0 | 1 | 303 | 1 | 314 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 8e-22 | 97 | 285 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 3e-19 | 60 | 284 | 26 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_F | 3e-19 | 60 | 284 | 26 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_E | 3e-19 | 60 | 284 | 26 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
PDB | 2iq7_D | 3e-19 | 60 | 284 | 26 | 268 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |