| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10001483m |
| Family | GH28 |
| Protein Properties | Length: 394 Molecular Weight: 42828.9 Isoelectric Point: 10.6305 |
| Chromosome | Chromosome/Scaffold: 22 Start: 246483 End: 247975 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 54 | 382 | 0 |
| SLACRSRARAMVYIPRGTYLVRNIVFWGPCKNIITFKIDGTLVAPANYWSIGNSGYWILFAKVNRISVYGGTIDARGAGYWSCRKKGGHCPQGARSISFS WCNNVLLSGLTSYNSQNMHVTVHHSSNVRIQNIRIRAPSGSPNTDGIHIQSSSGVTISGGTIATGDDCIALSQGSRNIWIERVNCGPGHGISIGSLGDYA NEEGVQNVTVTSSVFTKTQNGVRIKTWARPSRGFVRNVVYRNLIMRNVDNPVIIDQNYCPNGKGCPRQSSGVKISGVTFANIKGTSTTPIAMKLDCSGSN HCTGLRLQDIKLTYRRRSSTSYCRNVHGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 394 Download |
| MAKNTPFPFA SILFSIVLLL INSSNAMPSF NVQRYGARGD GRTDATKPFL TAWSLACRSR 60 ARAMVYIPRG TYLVRNIVFW GPCKNIITFK IDGTLVAPAN YWSIGNSGYW ILFAKVNRIS 120 VYGGTIDARG AGYWSCRKKG GHCPQGARSI SFSWCNNVLL SGLTSYNSQN MHVTVHHSSN 180 VRIQNIRIRA PSGSPNTDGI HIQSSSGVTI SGGTIATGDD CIALSQGSRN IWIERVNCGP 240 GHGISIGSLG DYANEEGVQN VTVTSSVFTK TQNGVRIKTW ARPSRGFVRN VVYRNLIMRN 300 VDNPVIIDQN YCPNGKGCPR QSSGVKISGV TFANIKGTST TPIAMKLDCS GSNHCTGLRL 360 QDIKLTYRRR SSTSYCRNVH GRASGVMVPR NCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 1.0e-79 | 23 | 390 | 375 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 1.0e-83 | 57 | 384 | 331 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 7.0e-88 | 30 | 393 | 372 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-99 | 25 | 392 | 378 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-144 | 11 | 393 | 384 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | NP_181916.1 | 0 | 1 | 393 | 1 | 394 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002309713.1 | 0 | 1 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331633.1 | 0 | 9 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002331634.1 | 0 | 9 | 393 | 1 | 390 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002529095.1 | 0 | 12 | 393 | 6 | 390 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1nhc_F | 8e-23 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 8e-23 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 8e-23 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 8e-23 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_B | 8e-23 | 123 | 384 | 77 | 335 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
