y
Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10001486m |
Family | GH28 |
Protein Properties | Length: 393 Molecular Weight: 42172.4 Isoelectric Point: 10.6877 |
Chromosome | Chromosome/Scaffold: 22 Start: 254293 End: 255824 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 52 | 380 | 0 |
WQAACRSAASVTVTVPRGSFLLKPVQFRGPCRSRITFQIYGTIVAPSDYRGLGNSGSWILFVKVNRISINGGTLDARGASFWACRKSGKSCPAGARSMTF NWANDVVISGLKSINSQATHLVINSCNNVIVRKIKLMAPDQSPNTDGLHVQGSAGVTVIDSTFQTGDDCISIGPGTRNLYMSKLNCGPGHGISIGSLGRD ANEAGVQNITLVNSVFSGSDNGVRIKTWARKSTGFVRNVLFQNLVMKNVRNPIIVDQNYCPTHQGCPKQGSGVKISQIVYRNIKGTSRTQQALTFDCSRS NPCQAIRLHDIKLTFNGRSATSTCKNIKG |
Full Sequence |
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Protein Sequence Length: 393 Download |
MDYNKLVAVL LLFFSSFLLV RTSMAASNYN VVRFGAKPDG RTDSTKAFLG AWQAACRSAA 60 SVTVTVPRGS FLLKPVQFRG PCRSRITFQI YGTIVAPSDY RGLGNSGSWI LFVKVNRISI 120 NGGTLDARGA SFWACRKSGK SCPAGARSMT FNWANDVVIS GLKSINSQAT HLVINSCNNV 180 IVRKIKLMAP DQSPNTDGLH VQGSAGVTVI DSTFQTGDDC ISIGPGTRNL YMSKLNCGPG 240 HGISIGSLGR DANEAGVQNI TLVNSVFSGS DNGVRIKTWA RKSTGFVRNV LFQNLVMKNV 300 RNPIIVDQNY CPTHQGCPKQ GSGVKISQIV YRNIKGTSRT QQALTFDCSR SNPCQAIRLH 360 DIKLTFNGRS ATSTCKNIKG AKAGVVMPQG CL* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00295 | Glyco_hydro_28 | 3.0e-94 | 56 | 379 | 327 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 3.0e-99 | 21 | 389 | 377 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 5.0e-104 | 31 | 392 | 371 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 3.0e-107 | 29 | 391 | 371 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02155 | PLN02155 | 2.0e-178 | 23 | 392 | 372 | + polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | NP_181917.1 | 0 | 1 | 392 | 1 | 392 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002309713.1 | 0 | 9 | 392 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331634.1 | 0 | 9 | 392 | 9 | 390 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529097.1 | 0 | 1 | 392 | 1 | 388 | Polygalacturonase precursor, putative [Ricinus communis] |
RefSeq | XP_002529098.1 | 0 | 4 | 392 | 3 | 387 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ib4_B | 6e-21 | 122 | 378 | 81 | 333 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
PDB | 1ib4_A | 6e-21 | 122 | 378 | 81 | 333 | A Chain A, Plant Carboxylesterase Aecxe1 From Actinidia Eriantha With Acyl Adduct |
PDB | 1ia5_A | 6e-21 | 122 | 378 | 81 | 333 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
PDB | 1bhe_A | 8e-20 | 123 | 365 | 117 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 2iq7_G | 2e-19 | 42 | 378 | 6 | 331 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |