| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10001491m |
| Family | GH28 |
| Protein Properties | Length: 388 Molecular Weight: 41234.1 Isoelectric Point: 8.3847 |
| Chromosome | Chromosome/Scaffold: 22 Start: 239386 End: 241498 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 47 | 373 | 0 |
| ETACASSGAVTIVVPKGRFLLRSLNFDGSKCRPKPLTFRIDGTLVAPADYRVIGNEDYWIFFQHLDGVTVYGGILDAQGASLWDCKKSGKNCPSGATTIG FQSSNNVVVSGLTSLNSQMFHVVINGCNNVKLQGVKVLAAGNSPNTDGIHVQSSSTVSIFNTKISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGK DSVESGVENVTVKTVTFTGTDNGVRIKSWARPSSGFARKIRFQHCVMKNVENPIVIDQNYCPRNENCPRQVSGIKISDVLFVDIHGSSATEVGVKLDCSP KKPCTGIRLEDVKLTYRNKPAASACVH | |||
| Full Sequence |
|---|
| Protein Sequence Length: 388 Download |
| MASLLFLFVF FFLIISTCSA QSYNVLSFGA KPDGKTDATK AFMAVWETAC ASSGAVTIVV 60 PKGRFLLRSL NFDGSKCRPK PLTFRIDGTL VAPADYRVIG NEDYWIFFQH LDGVTVYGGI 120 LDAQGASLWD CKKSGKNCPS GATTIGFQSS NNVVVSGLTS LNSQMFHVVI NGCNNVKLQG 180 VKVLAAGNSP NTDGIHVQSS STVSIFNTKI STGDDCVSIG PGTNGLWIEN VACGPGHGIS 240 IGSLGKDSVE SGVENVTVKT VTFTGTDNGV RIKSWARPSS GFARKIRFQH CVMKNVENPI 300 VIDQNYCPRN ENCPRQVSGI KISDVLFVDI HGSSATEVGV KLDCSPKKPC TGIRLEDVKL 360 TYRNKPAASA CVHAGGIEAG FLQPNCL* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-88 | 24 | 386 | 370 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-89 | 50 | 367 | 326 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02793 | PLN02793 | 4.0e-93 | 25 | 384 | 368 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 9.0e-108 | 14 | 384 | 377 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 1.0e-142 | 15 | 387 | 375 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABK28534.1 | 0 | 1 | 387 | 1 | 384 | unknown [Arabidopsis thaliana] |
| EMBL | CAB75804.1 | 0 | 20 | 387 | 20 | 383 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 1 | 387 | 1 | 384 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_191544.2 | 0 | 20 | 387 | 20 | 388 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 1 | 387 | 6 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-21 | 116 | 361 | 113 | 362 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1czf_B | 2e-16 | 109 | 368 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1czf_A | 2e-16 | 109 | 368 | 95 | 352 | A Chain A, Endo-Polygalacturonase Ii From Aspergillus Niger |
| PDB | 1hg8_A | 0.000000000000007 | 60 | 337 | 28 | 308 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
| PDB | 2iq7_G | 0.00000000000004 | 121 | 337 | 80 | 296 | A Chain A, Crystal Structure Of The Polygalacturonase From Colletotrichum Lupini And Its Implications For The Interaction With Polygalacturonase- Inhibiting Proteins |
