| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10001590m |
| Family | GH19 |
| Protein Properties | Length: 261 Molecular Weight: 28362 Isoelectric Point: 8.4736 |
| Chromosome | Chromosome/Scaffold: 22 Start: 149756 End: 150861 |
| Description | Chitinase family protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH19 | 64 | 260 | 0 |
| VGSIVTQGFFNGIINQAGNGCAGKRFYTRDSFINAANTFPSFANSVTRREIATMFAHFTHETGHFCYIEEINGASRDYCDKNNRQYPCAPGKTYYGRGPI QLSWNYNYGPCGRSLGLDLLRQPELVSSNPTVAFRTGLWFWMNRVRPVLNQGFGATIRAINGMECNGGNSGAVNARIRYYRDYCGQLGVDPGPNLSC | |||
| Full Sequence |
|---|
| Protein Sequence Length: 261 Download |
| MVLTRISLVL LLCLLGFYSE TVRSQNCGCA PNVCCSQYGY CGTTDAYCGA GCRSGPCRGS 60 GGSVGSIVTQ GFFNGIINQA GNGCAGKRFY TRDSFINAAN TFPSFANSVT RREIATMFAH 120 FTHETGHFCY IEEINGASRD YCDKNNRQYP CAPGKTYYGR GPIQLSWNYN YGPCGRSLGL 180 DLLRQPELVS SNPTVAFRTG LWFWMNRVRP VLNQGFGATI RAINGMECNG GNSGAVNARI 240 RYYRDYCGQL GVDPGPNLSC * 300 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| cd00035 | ChtBD1 | 0.0005 | 29 | 47 | 19 | + Hevein or type 1 chitin binding domain. Hevein or type 1 chitin binding domain (ChtBD1), a lectin domain found in proteins from plants and fungi that bind N-acetylglucosamine, plant endochitinases, wound-induced proteins such as hevein, a major IgE-binding allergen in natural rubber latex, and the alpha subunit of Kluyveromyces lactis killer toxin. This domain is involved in the recognition and/or binding of chitin subunits; it typically occurs N-terminal to glycosyl hydrolase domains in chitinases, together with other carbohydrate-binding domains, or by itself in tandem-repeat arrangements. | ||
| COG3179 | COG3179 | 3.0e-5 | 154 | 244 | 92 | + Predicted chitinase [General function prediction only] | ||
| cd00442 | lysozyme_like | 2.0e-13 | 144 | 210 | 67 | + lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides. | ||
| pfam00182 | Glyco_hydro_19 | 7.0e-98 | 67 | 260 | 232 | + Chitinase class I. | ||
| cd00325 | chitinase_glyco_hydro_19 | 9.0e-99 | 68 | 260 | 230 | + Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the procaryotic/eucaryotic divergence. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004568 | chitinase activity |
| GO:0006032 | chitin catabolic process |
| GO:0008061 | chitin binding |
| GO:0016998 | cell wall macromolecule catabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABV89613.1 | 0 | 1 | 260 | 1 | 268 | chitinase [Brassica rapa] |
| DDBJ | BAF35569.1 | 0 | 1 | 260 | 1 | 268 | chitinase [Brassica rapa subsp. pekinensis] |
| RefSeq | NP_181886.1 | 0 | 1 | 260 | 1 | 265 | chitinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181887.1 | 0 | 1 | 260 | 1 | 264 | chitinase, putative [Arabidopsis thaliana] |
| Swiss-Prot | Q06209 | 0 | 1 | 260 | 1 | 268 | CHI4_BRANA RecName: Full=Basic endochitinase CHB4; Flags: Precursor |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3hbh_A | 0 | 63 | 260 | 1 | 204 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3hbe_X | 0 | 63 | 260 | 1 | 204 | A Chain A, The Crystal Structure Of Rice (Oryza Sativa L.) Os4bglu12 |
| PDB | 3hbd_A | 0 | 63 | 260 | 1 | 204 | A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a |
| PDB | 2z38_A | 0 | 61 | 260 | 3 | 240 | A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
| PDB | 2z37_D | 0 | 65 | 260 | 4 | 237 | A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic Module (Bjchi3) |
