| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10001794m |
| Family | GH28 |
| Protein Properties | Length: 403 Molecular Weight: 43293.3 Isoelectric Point: 6.0336 |
| Chromosome | Chromosome/Scaffold: 22 Start: 236179 End: 237683 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 58 | 386 | 0 |
| HVACTSANPTTIIVPKGRFLVGNLVFQGNKCTDAPISIRIAGSIIAPEDYRVIASSEQWIWFEDVTDVSIYGGVLDAQGTSLWKCKNNGDGNCPNGAKTL LFTGSNNIIINGLTSINSQRFHIVIDNSNNVNIDGVKVSADGNSPNTDGIHIQSSHSVHITNSRIGTGDDCISIGPGSTYVIIQNIQCGPGHGISIGSLG RVEEEQGVENVTVSNVDFLATENGVRIKTWGKTSKSFARNIVFQHINMKMVKNPIIIDQHYCLDKPCPIQESGVEVSNVRYEDIRGTSNTEVAIMLDCSK EKPCTGIVMGDVNLVLVNRPAQASCDHAD | |||
| Full Sequence |
|---|
| Protein Sequence Length: 403 Download |
| MVQKTPCILL PFALLFLEFI LFSSLAKPIP TTFVNVLTYG AKPDGSTDST KAFLAAWHVA 60 CTSANPTTII VPKGRFLVGN LVFQGNKCTD APISIRIAGS IIAPEDYRVI ASSEQWIWFE 120 DVTDVSIYGG VLDAQGTSLW KCKNNGDGNC PNGAKTLLFT GSNNIIINGL TSINSQRFHI 180 VIDNSNNVNI DGVKVSADGN SPNTDGIHIQ SSHSVHITNS RIGTGDDCIS IGPGSTYVII 240 QNIQCGPGHG ISIGSLGRVE EEQGVENVTV SNVDFLATEN GVRIKTWGKT SKSFARNIVF 300 QHINMKMVKN PIIIDQHYCL DKPCPIQESG VEVSNVRYED IRGTSNTEVA IMLDCSKEKP 360 CTGIVMGDVN LVLVNRPAQA SCDHADGLAN DVVPFAPCLK RD* 420 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam00295 | Glyco_hydro_28 | 2.0e-81 | 61 | 372 | 316 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 9.0e-85 | 30 | 386 | 363 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 5.0e-86 | 36 | 402 | 374 | + Probable polygalacturonase | ||
| PLN02188 | PLN02188 | 2.0e-97 | 31 | 385 | 363 | + polygalacturonase/glycoside hydrolase family protein | ||
| PLN02155 | PLN02155 | 4.0e-110 | 35 | 401 | 369 | + polygalacturonase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ABD33834.1 | 0 | 9 | 399 | 7 | 393 | polygalacturonase [Prunus domestica subsp. insititia] |
| GenBank | ABK28534.1 | 0 | 9 | 388 | 1 | 374 | unknown [Arabidopsis thaliana] |
| RefSeq | NP_181914.1 | 0 | 1 | 402 | 1 | 401 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | NP_181915.1 | 0 | 9 | 388 | 1 | 374 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
| RefSeq | XP_002529090.1 | 0 | 12 | 399 | 9 | 393 | Polygalacturonase precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 1e-17 | 123 | 371 | 109 | 361 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1nhc_F | 0.00000000000001 | 120 | 382 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_E | 0.00000000000001 | 120 | 382 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_D | 0.00000000000001 | 120 | 382 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
| PDB | 1nhc_C | 0.00000000000001 | 120 | 382 | 68 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
