| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10002498m |
| Family | GH28 |
| Protein Properties | Length: 495 Molecular Weight: 54480.9 Isoelectric Point: 7.96 |
| Chromosome | Chromosome/Scaffold: 4 Start: 13227054 End: 13230568 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 111 | 456 | 0 |
| GQLNVPPGKWLTAPFNLTSYITLFLAENAEILAVQDENLWPLLPPLPSYGYGREHPGPRYGSFIHGQNLRDVVVTGNNGSINGQGQTWWKKYRQKLLNHT RGPLVQIMWSSDVVFANITLRDSPFWTLHPYDCKNVTITNMTILAPVFEAPNTDGIDPDSCEDMIIESSYISVGDDGIAIKSGWDQYGTTYGRPSKNILI RNLIIRSMVSAGISIGSEMSGGVSNITVENILIWSSRRGVRIKTAPGRGGYVRDITFRNVTLDELRVGIVIKTDYNEHPDGGFNPQAFPVLENINYTGVY GQGVRVPVRIQGSKEIPVKNVTFRDMSVGITYKKKHIFQCAYVQGR | |||
| Full Sequence |
|---|
| Protein Sequence Length: 495 Download |
| MVEPLPRRFL SSHKSLVSVF WIATFASLFI WQFGGVTGRG GSLYGVSGGL SVFWWTATAA 60 AAVSSGGFPQ LRPVAFNLTD FGAVGDGVTM NTEAFEKAIF AISKLGKRGG GQLNVPPGKW 120 LTAPFNLTSY ITLFLAENAE ILAVQDENLW PLLPPLPSYG YGREHPGPRY GSFIHGQNLR 180 DVVVTGNNGS INGQGQTWWK KYRQKLLNHT RGPLVQIMWS SDVVFANITL RDSPFWTLHP 240 YDCKNVTITN MTILAPVFEA PNTDGIDPDS CEDMIIESSY ISVGDDGIAI KSGWDQYGTT 300 YGRPSKNILI RNLIIRSMVS AGISIGSEMS GGVSNITVEN ILIWSSRRGV RIKTAPGRGG 360 YVRDITFRNV TLDELRVGIV IKTDYNEHPD GGFNPQAFPV LENINYTGVY GQGVRVPVRI 420 QGSKEIPVKN VTFRDMSVGI TYKKKHIFQC AYVQGRVIGT IFPAPCDNLD RYDEQEQLVK 480 QSDSQNATDI DYEI* 540 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02218 | PLN02218 | 3.0e-23 | 73 | 385 | 324 | + polygalacturonase ADPG | ||
| PLN02793 | PLN02793 | 2.0e-27 | 69 | 466 | 418 | + Probable polygalacturonase | ||
| PLN03003 | PLN03003 | 2.0e-30 | 75 | 386 | 320 | + Probable polygalacturonase At3g15720 | ||
| pfam00295 | Glyco_hydro_28 | 6.0e-36 | 173 | 453 | 287 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| COG5434 | PGU1 | 5.0e-59 | 75 | 395 | 343 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAN28906.1 | 0 | 7 | 494 | 3 | 484 | At3g42950/F18P9_110 [Arabidopsis thaliana] |
| RefSeq | NP_189881.1 | 0 | 7 | 494 | 3 | 484 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | XP_002324728.1 | 0 | 9 | 493 | 27 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002326133.1 | 0 | 9 | 493 | 27 | 494 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002516244.1 | 0 | 9 | 493 | 25 | 493 | polygalacturonase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 0 | 69 | 435 | 21 | 407 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 1bhe_A | 4e-16 | 120 | 396 | 52 | 324 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
