Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10004137m |
Family | GH28 |
Protein Properties | Length: 474 Molecular Weight: 51265.7 Isoelectric Point: 9.4584 |
Chromosome | Chromosome/Scaffold: 6 Start: 6345310 End: 6349107 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 91 | 430 | 0 |
KAACEVAGGKIEIPAGKEFMVKPVTLQGPCKEETVIQIEGTLVAPGKIGSWPKSSLFQWLNFKWVGHVTIQGSGTFDARGFNWWNLDTYQTHKRNKYIPP MKPTALRFYASDNVTVRDISIVNSPLCHLKFDNSDGVRVNNITISSPENSPNTDGIHLQNTRNVEIQHSNIACGDDCVSIQTGSSNVHIHHISCGPGHGI SIGGLGKDKSVACVSDIIVEDISLQNTLAGVRIKTWQGGLGVVKNLTFSNIQVTDVKVPIVIDQYYCDKSKCKNQTGAVSISGVKYNNIVGSFTVQPVRI ACSNNVPCMDVDLLDIRLRPSGGIRGLQTHQQQQALCWNS |
Full Sequence |
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Protein Sequence Length: 474 Download |
MKTMKSSPLL AILLCVIIVA AAISTISVEG RKHHVKKIKP KHRRHSKNTP TGSPAPAPYP 60 STHEGVFDIL SFGAKGDGVS DDSKALVGAW KAACEVAGGK IEIPAGKEFM VKPVTLQGPC 120 KEETVIQIEG TLVAPGKIGS WPKSSLFQWL NFKWVGHVTI QGSGTFDARG FNWWNLDTYQ 180 THKRNKYIPP MKPTALRFYA SDNVTVRDIS IVNSPLCHLK FDNSDGVRVN NITISSPENS 240 PNTDGIHLQN TRNVEIQHSN IACGDDCVSI QTGSSNVHIH HISCGPGHGI SIGGLGKDKS 300 VACVSDIIVE DISLQNTLAG VRIKTWQGGL GVVKNLTFSN IQVTDVKVPI VIDQYYCDKS 360 KCKNQTGAVS ISGVKYNNIV GSFTVQPVRI ACSNNVPCMD VDLLDIRLRP SGGIRGLQTH 420 QQQQALCWNS YGKTQGPLVP SSIGYCLKKS NTGRGYYPKR FIASSSHDKI CPS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 2.0e-70 | 67 | 413 | 357 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-70 | 100 | 408 | 310 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-71 | 49 | 440 | 397 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 4.0e-76 | 72 | 440 | 374 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 1.0e-94 | 53 | 452 | 404 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAA66407.1 | 0 | 85 | 412 | 1 | 328 | polygalacturonase precursor homologue [Arabidopsis thaliana] |
RefSeq | NP_189293.1 | 0 | 29 | 473 | 29 | 470 | polygalacturonase, putative / pectinase, putative [Arabidopsis thaliana] |
RefSeq | XP_002266099.1 | 0 | 29 | 449 | 29 | 460 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002312682.1 | 0 | 31 | 472 | 31 | 467 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527898.1 | 0 | 1 | 471 | 1 | 477 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 4e-28 | 160 | 359 | 113 | 317 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 7e-25 | 68 | 449 | 22 | 362 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1nhc_F | 2e-17 | 101 | 400 | 26 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 2e-17 | 101 | 400 | 26 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 2e-17 | 101 | 400 | 26 | 310 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |