| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10004215m |
| Family | GH28 |
| Protein Properties | Length: 448 Molecular Weight: 48245.3 Isoelectric Point: 5.4896 |
| Chromosome | Chromosome/Scaffold: 6 Start: 4694800 End: 4697533 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 72 | 419 | 0 |
| DKGGAQLYVPPGRWLTGSFNLTSHLTLFLEKDAVILASQDPSHWQVVDPLPSYGRGIDLPGKRYMSLINGYMLHDVVVTGDNGTIDGQGLLWWDRFNSQS LEHSRPHLVEFVSSENVIVSNLTFLNAPAYTIHSVYCSHVYIHKVTANTSPQSPYTIGIVPDSSENVCIQDSIINMGYDAISLKSGWDEYGISYARPTAN VQIRNVYLRAASGSSISFGSEMSGGISDVVVRDAHIHNSLSGIAFRTTTGRGGYMKEIDASNIYMVNVGTAFLANGSFGTHPDSGFDADAFPLVSHIRLH DIVGENISAAGDFFGTKESPFTSVLLSNISLSMKNSGSADDSWQCLFV | |||
| Full Sequence |
|---|
| Protein Sequence Length: 448 Download |
| MPVALALLLA LCSLIPIYAR SYGVGNVCEL GRRPNTRPHS VSILEFGAVG DGKTLNTLAF 60 QNAVFYLKSF ADKGGAQLYV PPGRWLTGSF NLTSHLTLFL EKDAVILASQ DPSHWQVVDP 120 LPSYGRGIDL PGKRYMSLIN GYMLHDVVVT GDNGTIDGQG LLWWDRFNSQ SLEHSRPHLV 180 EFVSSENVIV SNLTFLNAPA YTIHSVYCSH VYIHKVTANT SPQSPYTIGI VPDSSENVCI 240 QDSIINMGYD AISLKSGWDE YGISYARPTA NVQIRNVYLR AASGSSISFG SEMSGGISDV 300 VVRDAHIHNS LSGIAFRTTT GRGGYMKEID ASNIYMVNVG TAFLANGSFG THPDSGFDAD 360 AFPLVSHIRL HDIVGENISA AGDFFGTKES PFTSVLLSNI SLSMKNSGSA DDSWQCLFVD 420 GSSESVVPEP CPELKSFDSS YGVAVAL* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02793 | PLN02793 | 9.0e-15 | 34 | 339 | 323 | + Probable polygalacturonase | ||
| pfam00295 | Glyco_hydro_28 | 7.0e-19 | 146 | 416 | 280 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02218 | PLN02218 | 2.0e-20 | 38 | 339 | 318 | + polygalacturonase ADPG | ||
| PLN03003 | PLN03003 | 4.0e-24 | 36 | 428 | 400 | + Probable polygalacturonase At3g15720 | ||
| COG5434 | PGU1 | 9.0e-42 | 41 | 353 | 338 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAM65366.1 | 0 | 69 | 444 | 2 | 375 | polygalacturonase-like protein [Arabidopsis thaliana] |
| RefSeq | NP_001032043.1 | 0 | 1 | 447 | 1 | 447 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_566292.1 | 0 | 69 | 444 | 2 | 375 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_680409.1 | 0 | 15 | 447 | 17 | 449 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| RefSeq | NP_850525.1 | 0 | 1 | 444 | 1 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3jur_D | 4e-29 | 32 | 423 | 19 | 445 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_C | 4e-29 | 32 | 423 | 19 | 445 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_B | 4e-29 | 32 | 423 | 19 | 445 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 3jur_A | 4e-29 | 32 | 423 | 19 | 445 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
| PDB | 2uvf_B | 0.000000000002 | 33 | 379 | 149 | 528 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
