| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10004530m |
| Family | GT47 |
| Protein Properties | Length: 341 Molecular Weight: 39366.7 Isoelectric Point: 9.0623 |
| Chromosome | Chromosome/Scaffold: 6 Start: 10455145 End: 10456798 |
| Description | xylogalacturonan deficient 1 |
| View CDS | |
| External Links |
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| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GT47 | 3 | 290 | 0 |
| NRFKVWTYTEGEPPLFHDGPVNDIYGIEGQFMDEMCLEGPKRSRFRADHPDNAHVFFLPFSVAKVIHFVYKPINSVEGFSRARLHRLIEDYVDVVATKYP YWNKSQGGDHFMVSCHDWAPDVIDGNPKLFEKFIRGLCNANTSEGFRPSIDVSIPEIYLPKGKLGPSFLGKSPRVRSILAFFAGRTHGEIRKILFKHWKE KDSEVQVYERLPPGKDYTKLMGMSKFCLCPSGWEVASPREVEAIYAGCVPVIISDNYSLPFSDVLNWDSFSIQIPVSRISEIKTILET | |||
| Full Sequence |
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| Protein Sequence Length: 341 Download |
| MMNRFKVWTY TEGEPPLFHD GPVNDIYGIE GQFMDEMCLE GPKRSRFRAD HPDNAHVFFL 60 PFSVAKVIHF VYKPINSVEG FSRARLHRLI EDYVDVVATK YPYWNKSQGG DHFMVSCHDW 120 APDVIDGNPK LFEKFIRGLC NANTSEGFRP SIDVSIPEIY LPKGKLGPSF LGKSPRVRSI 180 LAFFAGRTHG EIRKILFKHW KEKDSEVQVY ERLPPGKDYT KLMGMSKFCL CPSGWEVASP 240 REVEAIYAGC VPVIISDNYS LPFSDVLNWD SFSIQIPVSR ISEIKTILET VSLVRYLKMY 300 KRVLEVKRHF VLNRPAQPYD VMHMMLHSIW LRRLNLRLIA * 360 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam03016 | Exostosin | 4.0e-64 | 1 | 288 | 306 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0016020 | membrane |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | AAK83577.1 | 0 | 1 | 338 | 1 | 339 | AT5g33290/F19N2_10 [Arabidopsis thaliana] |
| GenBank | ABA18091.1 | 0 | 1 | 338 | 1 | 339 | exostosin family protein [Olimarabidopsis pumila] |
| GenBank | ABA18105.1 | 0 | 1 | 338 | 83 | 421 | exostosin family protein [Capsella rubella] |
| GenBank | ABA18110.1 | 0 | 2 | 338 | 1 | 338 | exostosin family protein [Arabidopsis arenosa] |
| RefSeq | NP_198314.2 | 0 | 1 | 338 | 160 | 498 | XGD1 (XYLOGALACTURONAN DEFICIENT 1); UDP-xylosyltransferase/ catalytic [Arabidopsis thaliana] |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| ES913631 | 219 | 123 | 341 | 0 |
| DN961964 | 206 | 1 | 206 | 0 |
| DK530961 | 209 | 133 | 341 | 0 |
| DK554378 | 197 | 145 | 341 | 0 |
| DK565402 | 195 | 147 | 341 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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