Basic Information | |
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Species | Thellungiella halophila |
Cazyme ID | Thhalv10005316m |
Family | CE8 |
Protein Properties | Length: 290 Molecular Weight: 31853.8 Isoelectric Point: 6.297 |
Chromosome | Chromosome/Scaffold: 6 Start: 3987733 End: 3989968 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 41 | 278 | 0 |
GDGQRVTTITYDAHEATDVSSTFTSYPSHIVVRNLTIMNTYNRLSFRSKPSWQIKPAVAVAVYGDKSAFYNCDFLGLQDTLWDVQGRHHFKDCYIEGAID FIFGSGQSVYEDCHINATAGALASEVTFGYITAQARTSVSDPSGFVFLRGSVSGTTNVYLGRAYGPFSRVVFIQTDLASVVIPEGWHPWHYAGHEMSFTY AEVECKGAGSDISKRVPWIAKLQSFYSKQRFSTSTFID |
Full Sequence |
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Protein Sequence Length: 290 Download |
MSFLFIFIAL LLSSCVGSST ATDSTCGNKV VSTIVVDKTE GDGQRVTTIT YDAHEATDVS 60 STFTSYPSHI VVRNLTIMNT YNRLSFRSKP SWQIKPAVAV AVYGDKSAFY NCDFLGLQDT 120 LWDVQGRHHF KDCYIEGAID FIFGSGQSVY EDCHINATAG ALASEVTFGY ITAQARTSVS 180 DPSGFVFLRG SVSGTTNVYL GRAYGPFSRV VFIQTDLASV VIPEGWHPWH YAGHEMSFTY 240 AEVECKGAGS DISKRVPWIA KLQSFYSKQR FSTSTFIDQD GWISNIPPF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02304 | PLN02304 | 5.0e-56 | 40 | 283 | 250 | + probable pectinesterase | ||
PLN02665 | PLN02665 | 4.0e-62 | 41 | 288 | 252 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 4.0e-63 | 60 | 285 | 226 | + pectinesterase family protein | ||
PLN02176 | PLN02176 | 3.0e-77 | 40 | 287 | 248 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 5.0e-89 | 41 | 287 | 248 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAB61046.1 | 0 | 1 | 289 | 1 | 244 | Similar to pectinesterase; F2P16.5 [Arabidopsis thaliana] |
RefSeq | NP_198033.2 | 0 | 1 | 289 | 1 | 293 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002318946.1 | 0 | 33 | 287 | 81 | 338 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 34 | 287 | 82 | 323 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002529267.1 | 0 | 40 | 287 | 93 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4e-31 | 41 | 283 | 63 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 2e-19 | 41 | 258 | 59 | 277 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 0.0000000000002 | 56 | 206 | 110 | 271 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 0.0000000000004 | 60 | 205 | 88 | 240 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 0.0000000000004 | 60 | 205 | 88 | 240 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |