| Basic Information | |
|---|---|
| Species | Thellungiella halophila |
| Cazyme ID | Thhalv10005587m |
| Family | GH28 |
| Protein Properties | Length: 436 Molecular Weight: 47886.9 Isoelectric Point: 4.4948 |
| Chromosome | Chromosome/Scaffold: 6 Start: 4706467 End: 4708288 |
| Description | polygalacturonase 4 |
| View CDS | |
| External Links |
|---|
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH28 | 88 | 410 | 0 |
| EAACKHEGITKFYVPEGKFLVGAIEFKGPCSTKSTLEVEIRGDLMAPTSIKQFPFNQWITFTQLNDIVLYGRANLEGRGEVEAWKQESCWKASKCDKLIT SLILGNVSNAIIRDITLSNAKGFHLGLHFTQNVTVQNVSISSPQDSPNTDGIHVHSSSYISINSSTIGVGDDCVSISTGSFNVLVFNTRCGPGHGISIGS LGKNKNEEEVRGIRVQNCTINGTDNGVRIKTWPTSPPSQASDMIFEDIIMMNVSNPIIINQEYCPSNSCSTTFASMVKLSNIEFKNIRGTYNTEFGVTLR CSSLVACENITLIDVNLSSINTT | |||
| Full Sequence |
|---|
| Protein Sequence Length: 436 Download |
| MTEYTFVIVV NFLVLVLVFI SSETVIASYD EFEAYDEEQL VPSSRYETIS PSEPPLGDLD 60 NVVFDVSEFG AIPDADTDST YAFEKTWEAA CKHEGITKFY VPEGKFLVGA IEFKGPCSTK 120 STLEVEIRGD LMAPTSIKQF PFNQWITFTQ LNDIVLYGRA NLEGRGEVEA WKQESCWKAS 180 KCDKLITSLI LGNVSNAIIR DITLSNAKGF HLGLHFTQNV TVQNVSISSP QDSPNTDGIH 240 VHSSSYISIN SSTIGVGDDC VSISTGSFNV LVFNTRCGPG HGISIGSLGK NKNEEEVRGI 300 RVQNCTINGT DNGVRIKTWP TSPPSQASDM IFEDIIMMNV SNPIIINQEY CPSNSCSTTF 360 ASMVKLSNIE FKNIRGTYNT EFGVTLRCSS LVACENITLI DVNLSSINTT EEMKQERFSM 420 KGSLHGLAVF NSNFN* 480 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02155 | PLN02155 | 6.0e-72 | 61 | 405 | 347 | + polygalacturonase | ||
| PLN02793 | PLN02793 | 7.0e-75 | 63 | 433 | 380 | + Probable polygalacturonase | ||
| PLN02218 | PLN02218 | 6.0e-79 | 66 | 404 | 343 | + polygalacturonase ADPG | ||
| pfam00295 | Glyco_hydro_28 | 9.0e-83 | 91 | 410 | 320 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
| PLN02188 | PLN02188 | 1.0e-106 | 64 | 404 | 343 | + polygalacturonase/glycoside hydrolase family protein | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004650 | polygalacturonase activity |
| GO:0005975 | carbohydrate metabolic process |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN69218.1 | 0 | 1 | 404 | 1 | 395 | hypothetical protein [Vitis vinifera] |
| EMBL | CAN69218.1 | 0 | 50 | 434 | 477 | 863 | hypothetical protein [Vitis vinifera] |
| EMBL | CBI22963.1 | 0 | 38 | 434 | 7 | 405 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002270999.1 | 0 | 50 | 434 | 58 | 444 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002272193.1 | 0 | 1 | 404 | 1 | 395 | PREDICTED: hypothetical protein [Vitis vinifera] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1bhe_A | 7e-17 | 143 | 409 | 100 | 366 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_B | 0.000000000000003 | 199 | 412 | 140 | 329 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ib4_A | 0.000000000000003 | 199 | 412 | 140 | 329 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
| PDB | 1ia5_A | 0.000000000000003 | 199 | 412 | 140 | 329 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |
| PDB | 1hg8_A | 0.000000000005 | 81 | 377 | 8 | 304 | A Chain A, Endopolygalacturonase From The Phytopathogenic Fungus Fusarium Moniliforme |
